Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1677 ATGGATAAGATGATAGCTTCAGAGATGGACCAACATAGACAAGGTTATTTTCATTCAGAACCCGGTATCCTTCCAAGAGGCACTGGCATCTCGCATCCTAATATCCGTACAATTGTGGCAGCTTCCGGGAGCACAAGTAATCATGATTCCCACTATTTACCACCAGATGCATATGACAATGGCGTATATGTGACACAGTATAACGGGGTTCAACCGCAACATAATCGTAACATGGCCGTTGCAGCCACGCCGAATTTATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGTGTATTCCCTATGCCTCTAAATCATAGAGGCTCTGATCAATTGCCTGGTTCGGGCCCGTATGCAGTGTCTTTAGTTTCTTCGGATAATTTTGGAAGAAGCAGCAGCTTCATGGATGATGTCAGAGGTCCTTACAAGAGGAAAAGTGCTGAAGGCATGAGAGGAAATTATCAGTATTTTAATGCTCCGGCTAGTTCCTCAACTGCTCCCCCTAATGCTAGGCATGCCGACGGGGTTCCGGTAATGGATACTGCGTCTTTTCCTCTGCGCGTCCCTTCATTTGTGGAAGTAGGACCACATGGTAATGCATGGAGCAGATCAGGTGATTCCATTATGGTGCACGATCATAACCATTTGATTCGAGGAAACTATGTAGGGCAGCACTTTCAGCCGGCAGCACCTCCGTGGTTGGACCAGCAGTTGAATAGTAATAACAACGATGGTCATACAACAGCATGGAATCAGTCTCTTCCAATGCCTTATATGCATGCTCCAAATGTTAATGGAGGTTCAATAGAGAGTGCAAGTATGGGTTTGCCAAGGTATCACGAAACGGCGAGCAACAGAAACGGCCTTAGATTTCCTCATCCTCCTCCGGTCAATCACCAGCACCATAATTATCATCATCCGGCACTGCCTATGCAAGGAGTAAGAGGTCACGGTGTTAACTTCCACCCTCCTGTAACTGCGGCTTCATTCAGAGTTCCAACGAATCCTTCACACAGTGCTGCAATGCCCACGCCTAATGGTTTCGAGATGGGCCCCAGGCATGTGGGCCCTGTGCCATCAGGAGGCCTACGCATCTACCGACCTCATAGGGGAGTCATGCATGATACTATTGGTCACCGAAATATTCCCCCCATGGGTTTCCTTCATGTTGATGATGTTGCTCTAATCGATGAGGTGGGAAATTTGGTTGACCATCACCGAGACATGCGCATGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATCGGCAACGTAAGCACTGGTTTATCAGAGGAAACAATTGCGGCCCAATTGAAAACAAAATCATATTTCAAACCGATTTCTGCTACTAATTCAGATGAGGCAGCCTTGGACGACTGCGAAGCTGATTCTTGCATTATATGCCAGGATGAATACAAGAACAAAGAGAAGATCGGAGTTCTGCGATGCGAGCACGAGTACCATGCGGATTGCTTGAGGAAGTGGTTGATTGTGAAGAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGGGAAGGATGTATAG 1572 0.4682 MDKMIASEMDQHRQGYFHSEPGILPRGTGISHPNIRTIVAASGSTSNHDSHYLPPDAYDNGVYVTQYNGVQPQHNRNMAVAATPNLYYSGMNPSSSTGVFPMPLNHRGSDQLPGSGPYAVSLVSSDNFGRSSSFMDDVRGPYKRKSAEGMRGNYQYFNAPASSSTAPPNARHADGVPVMDTASFPLRVPSFVEVGPHGNAWSRSGDSIMVHDHNHLIRGNYVGQHFQPAAPPWLDQQLNSNNNDGHTTAWNQSLPMPYMHAPNVNGGSIESASMGLPRYHETASNRNGLRFPHPPPVNHQHHNYHHPALPMQGVRGHGVNFHPPVTAASFRVPTNPSHSAAMPTPNGFEMGPRHVGPVPSGGLRIYRPHRGVMHDTIGHRNIPPMGFLHVDDVALIDEVGNLVDHHRDMRMDIEDMSYEDLLALGERIGNVSTGLSEETIAAQLKTKSYFKPISATNSDEAALDDCEADSCIICQDEYKNKEKIGVLRCEHEYHADCLRKWLIVKNVCPICKSEALTPGGKDV* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1677 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 520 IPR045191 GO:0061630
Amo18g1677 523 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 520 - -
Amo18g1677 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Amo18g1677 523 Pfam Ring finger domain 469 512 IPR001841 -
Amo18g1677 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 516 IPR013083 -
Amo18g1677 523 SMART ring_2 471 511 IPR001841 -
Amo18g1677 523 SUPERFAMILY RING/U-box 470 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1677 Amo-Chr18 33937822 33941597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1677 388 516 C3H Transcription Factor Family AT2G15530 47.015 1.53e-34 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1677 18 33937822 33941597 Amo18g1677 18 33937822 33941597 ECH
Amo18g1677 18 33937822 33941597 Amo07g2397 07 71015868 71019645 hybridization
Amo18g1677 18 33937822 33941597 Amo03g0030 03 705619 707409 PCT
Amo03g0030 03 705619 707409 Amo18g1677 18 33937822 33941597 PCT