Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5463 ATGATGACTCCAAATTTGAACTTGGAACCTGAAAATTACTCAGAAGGCAGCAGCCAAGTAGCTTCGAGCGCATCGCTCCAAGAAACATCCCCTGAACTCAACAAGGAAAGCACCACTGCTTCCTCCTGTCTTACAAATCTTACAAAGGCCGAAGGTGATCCCGGCTCCGTGACCCTTGACTTGACACTCAACTTCAATGCGAGTGACGGCGAGTTAAAGGGTACTAGTGATGCTAGCAGTGAAGTGGGACCAGAAGCTTTTGCTTCAGGATCAGCAACTCCCAGGGTGTTCTCTTGTAATTACTGCAGGAGGAAGTTCTTTAGCTCACAGGCTCTTGGGGGTCACCAGAATGCTCACAAAAGGGAGAGGACAATGGCAAAGCGGGCAATGCGAATGGGCATGTTCACCGAGAGGTATACAAGCTTAGCATCTCTGCCTCTTCATGGTTCACCTTTCCGGTCTCTTGGCATTGAAGCTCATTCTGCAATGCACCAAAGACCCATGCCACAATTGAGGGCTCCTGATTTGAGAGCGGGTGCAAAATTTGAGAGAAACCATTTTGGATCACCAATATTCATGGAAGATGAAGATGTTGGGCTATTTTGGCCAGGCAGTTTCCGACAGGTCGGGCAGCAAGCCGGTGTTAACATGGTACATGCTCAAACATCCAATACTAATTATTCTCCTATGCCACCTGCTCAACCAAAAGCATCAACATCTCCAGATCTCACCCTCAAGCTTTAG 744 0.4798 MMTPNLNLEPENYSEGSSQVASSASLQETSPELNKESTTASSCLTNLTKAEGDPGSVTLDLTLNFNASDGELKGTSDASSEVGPEAFASGSATPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGIEAHSAMHQRPMPQLRAPDLRAGAKFERNHFGSPIFMEDEDVGLFWPGSFRQVGQQAGVNMVHAQTSNTNYSPMPPAQPKASTSPDLTLKL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5463 247 Gene3D Classic Zinc Finger 88 143 - -
Amo13g5463 247 PANTHER ZINC FINGER PROTEIN JAGGED 7 247 IPR045320 GO:0003700
Amo13g5463 247 MobiDBLite consensus disorder prediction 222 247 - -
Amo13g5463 247 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 247 - -
Amo13g5463 247 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Amo13g5463 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Amo13g5463 247 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Amo13g5463 247 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5463 Amo-Chr13 155566382 155569618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5463 91 247 C2H2 Transcription Factor Family AT1G66140 45.745 2.62e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g5463 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5463 13 155566382 155569618 Amo13g5463 13 155566382 155569618 ECH