Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5458 ATGGGATTGGGAGGAGGGTTGGTCACGTTCTTTTTGTGTCTACTATTTTTTGCTGCGCCTTCTGCTTCATCAACAAACTTATTGCCTATCATACCCTTCGATGAAGGATACGCACCCTTGTTTGGGGATAACAACTTGGTCATTCACAGGGATGGAAAAACCGTCCATCTTTCACTCGATGAGAGAACAGGTTCTGGATTCGTGTCTCATGATCTTTACCTCCATGGATATTTCAGAGCTTCCATTAAGCTACCTGCTGACTACACCGCTGGGGTTGTGGTTGCCTTTTATATGTCAAATGGTGACATGTTCCAGAACAACCATGATGAAATAGACTTTGAGTTCTTGGGGAATATAAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGTACAAGCATTGGCAGGGAGGAAAGATATGGCCTCTGGTTCGATCCTGCTGAGGATTTCCATCAGTACAGTATTCTCTGGACTGATTCTCAGATCATATTTTATGTAGATAATGTTCCTATTAGGGAAATTAAGCGGACGGAATCTATGGGAGGTGACTTCCCTTCTAAACCTATGACTTTGTACGCGACAATATGGGACGCATCTGATTGGGCAACCAATGGAGGCAAATACAGAGTGAATTACAAGTATGCACCCTATGTCGCCGAGTTCTCTGATCTTGTCTTGCACGGTTGTGCGGTCGATCCCATTGAACATGAAGCCAAGTGTGACAATGCTCAAACTTCCAAAGCAGTTCCTACTGGTGTTACACCAGCACAAAGAATCAAGATGGAGAACTTCAGGAAGAAGCACATGACATACTCTTACTGTTATGACAAAGTCAGATACAAAGTCCCTCCAACAGAGTGTCTCATTAATCCCCAAGAAGCTGAGAGGCTGAGAAAATTCGACCCTGTGACATTCGGTGGTGGCCGGCGCCGCCACGGAAAGCGACATTATCGCAGCAGAGGGAGCCAGGCAGAAGAAGCTGCTGCATTTTGA 1005 0.4527 MGLGGGLVTFFLCLLFFAAPSASSTNLLPIIPFDEGYAPLFGDNNLVIHRDGKTVHLSLDERTGSGFVSHDLYLHGYFRASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTSIGREERYGLWFDPAEDFHQYSILWTDSQIIFYVDNVPIREIKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHEAKCDNAQTSKAVPTGVTPAQRIKMENFRKKHMTYSYCYDKVRYKVPPTECLINPQEAERLRKFDPVTFGGGRRRHGKRHYRSRGSQAEEAAAF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5458 334 MobiDBLite consensus disorder prediction 307 334 - -
Amo13g5458 334 CDD GH16_XET 31 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo13g5458 334 Pfam Glycosyl hydrolases family 16 37 217 IPR000757 GO:0004553|GO:0005975
Amo13g5458 334 Gene3D - 18 291 - -
Amo13g5458 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 312 IPR044791 GO:0004553
Amo13g5458 334 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 10 312 - -
Amo13g5458 334 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Amo13g5458 334 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 295 IPR013320 -
Amo13g5458 334 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 225 IPR000757 GO:0004553|GO:0005975
Amo13g5458 334 PIRSF EndGlu_transf 5 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5458 Amo-Chr13 155480520 155483579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5458 6 329 Glycoside Hydrolase AT1G14720 67.576 5.12e-170 474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5458 13 155480520 155483579 Amo13g5458 13 155480520 155483579 ECH