Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5435 ATGGATGATGATATGTTGAACATGACCAATTGGGGATACTATGAACCCTTCAAAGGAGGGCATCTTGGCCTGCAGCTCATGCCTGGTATGACAGATCGTGACACAAAACCATTTATGCCTGGTCGGGATCCAACTATGTTAGTTAATACAAATGGAGCATTTCACCCTCGAGACTGTGTAGTTTCCGAAGCACAAATGCCAATCAACTATGTGAGGGATAGTTGGATAAGCCAGCGAGATAGGTTTTTCAATATGCAGCCTACCAATCCCAATTATCCTGTTCTTCCGGAAACTTCAGCCGCTCCAACACAAATTACACAGCCACCTGATACATCAAGAGATGAGAAGGCTGATATAGTTGAAGAAACAGTGCAAAAGGAAGGAGTCCAACCAAGGAAACGGCAGGGTAGGGTTGCCTCAACAACTCCAAAAGCGAAGAAACCAAGGAAGCCGAAGGATAAAAGCAATGCTCCTGTCCAAAGATCAAAGCCCATGAAGACAATTGAGTTTGTAATAAATGGAATTGATATGGATATTTCCAGTTTACCCATTCCAGTTTGTTCATGTACTGGGACTCCGCAGCAGTGTTATCGCTGGGGATGTGGAGGATGGCAGTCTGCTTGTTGTACTACAAATGTGTCGACATATCCATTGCCAATGAGCATGAAACGACGTGGGGCAAGGATAGCTGGACGGAAAATGAGCCAGGGTGCTTTTAAGAAGGTATTAGAGAAACTAGCAGCCGAAGGCTATAATTTTGGTAACCCAATTGACCTGAGGAATCACTGGGCTAGACATGGCACCAACAAATTTGTCACTATCAGGTAG 828 0.4457 MDDDMLNMTNWGYYEPFKGGHLGLQLMPGMTDRDTKPFMPGRDPTMLVNTNGAFHPRDCVVSEAQMPINYVRDSWISQRDRFFNMQPTNPNYPVLPETSAAPTQITQPPDTSRDEKADIVEETVQKEGVQPRKRQGRVASTTPKAKKPRKPKDKSNAPVQRSKPMKTIEFVINGIDMDISSLPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSTYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFGNPIDLRNHWARHGTNKFVTIR* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5435 275 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 1 275 - -
Amo13g5435 275 MobiDBLite consensus disorder prediction 87 164 - -
Amo13g5435 275 MobiDBLite consensus disorder prediction 87 110 - -
Amo13g5435 275 Pfam GAGA binding protein-like family 1 275 IPR010409 -
Amo13g5435 275 MobiDBLite consensus disorder prediction 111 133 - -
Amo13g5435 275 SMART GAGA_bind_2 1 275 IPR010409 -
Amo13g5435 275 PANTHER - 1 275 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5435 Amo-Chr13 155256656 155258780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5435 1 275 BBR or BPC Transcription factor family AT2G01930 56.478 7.68e-102 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Amo13g5435 GAGA_bind 8.1e-102 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5435 13 155256656 155258780 Amo13g5435 13 155256656 155258780 ECH