Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4973 ATGGTGGCGAAATCAGGCGAGAATGGCTGTGTGGCTCCGTTCCTTCAGAAGTGCTACGATATGGTCTCCGACCCTTCCACCGACTCCGTCATCTCTTGGACCCATCAAGGCCACACCTTCCTCATCTCCGATATCACCCAATTCTCCCTCACTCTTCTCCCCAATTACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAACATCTACGGCTTCAGGAAAATTGATACGGACCGCTGGGAATTCGCCAATGACAACTTTGTGAAGGGTCAAAAGCATTTGTTGATCAATATTCGGAGAAGGAAACATCCGCACGCTGCAGATCATCAAAAGCCAGACAATTCTGATGAAGCAGCAGCAAATGATGGGCTTTGGAAGGAAGTGGAGAATCTAAAATCCAACAAGAATTCCCTCATGCAGGAGTTGGTTAAACTCAGGCAGCATCAAGAATCTGCCGAGAATAAGCTGCTACTCCTCACTGATCGCCTTCAAGGAATGGAGAAGCATCAGCAGCAGATGCTATCATTCTTGGTCATGGTTGTTCAAAGTCCCGGCTTCATGGTTCAACTCCTTCAGCCTAACGAAAACAATTGGCGAATGGCCGAACTTGGAGATGGGAATGGGATGATAGTAAAGTATAAACCTCCGGTGCCCGAAAATCTCAAGCCTGTAGTTCCCCGATCACCCACTTTCGAGAAGCAACCGGAACCTGAGCTTTCTTTCGATGGTTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAAGTTCTTATGGATGAGAAGTTGTCTCCTTTGGAAAATCATCCTCCATTTCTTCTTCCGGATTTACCTGATGATGGTTCATGGGAGCAACTTTTTCTTGGCAGTCCTTTCTTGCAAAACACTGATGAAGCTGACAAGCCCACTGTCAGCGGAATGGAGATAGAACCCATCACACACGAAGATCAAACTGAAAAGTCTCAGTCTTTTGAATCTTTGATTCTAGAAATGGAGAAAACTGAAGAGACCGATGCATTGGAATTACGAGCTGATGGAGTTCATTTGGAGGGGTCGGAGAAACTGAAATCTCTAACCAAGCAAATGGAACTTCTGGCTTCTGAAACTGACAATGAAGAGGAGGAGGAAGAGGAAGGAAGGAAGTGA 1149 0.4595 MVAKSGENGCVAPFLQKCYDMVSDPSTDSVISWTHQGHTFLISDITQFSLTLLPNYFKHNNFSSFIRQLNIYGFRKIDTDRWEFANDNFVKGQKHLLINIRRRKHPHAADHQKPDNSDEAAANDGLWKEVENLKSNKNSLMQELVKLRQHQESAENKLLLLTDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPNENNWRMAELGDGNGMIVKYKPPVPENLKPVVPRSPTFEKQPEPELSFDGLKDLCISSEFLKVLMDEKLSPLENHPPFLLPDLPDDGSWEQLFLGSPFLQNTDEADKPTVSGMEIEPITHEDQTEKSQSFESLILEMEKTEETDALELRADGVHLEGSEKLKSLTKQMELLASETDNEEEEEEEGRK* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4973 382 SUPERFAMILY "Winged helix" DNA-binding domain 11 103 IPR036390 -
Amo13g4973 382 MobiDBLite consensus disorder prediction 355 382 - -
Amo13g4973 382 Gene3D - 7 104 IPR036388 -
Amo13g4973 382 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4973 382 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4973 382 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 316 - -
Amo13g4973 382 Coils Coil 130 157 - -
Amo13g4973 382 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4973 382 Coils Coil 356 376 - -
Amo13g4973 382 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4973 382 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4973 382 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g4973 382 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 316 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4973 Amo-Chr13 148737192 148739513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4973 11 368 HSF AT1G67970 45.504 3.12e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo13g4973 HSF_DNA-bind 6.1e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4973 13 148737192 148739513 Amo13g4973 13 148737192 148739513 ECH