Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4961 ATGGCGATGGCGAAAGAGAAAGAGGAGGATGAAGAGCACAACCACAACGGTGGGAAGAGGCTGAAATGCATGAGGAACGAAGGGAAAGAGGATGATGCAGTTGTTGCAATTGGAGAAGACGAGAGTGAGCTTCCTTTGAAGCCAGGGATCTTCTTCTACCCAGCAACACCAACCTCCGTTGTTGTTTGTGATGCGCTTGAACCTGATTTCCCCATCATCTATGTCAACAAGGTCTTTGAAATCTTCACCGGCTATCGTGCTGATGAGGCTCTCGGTCGAAACTGTCGGTTCTTGCAGTTCAGAGATCCTCGAGCTCAGAGGCGGCACCCATTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGCCTTGAGGAAGGCATTGAGTTCCAAGGTGAACTTCTGAATTTCCGAAAGGATGGTACTCCTTTGGTGAATAGACTCAGACTTGCACCAATTCATGATGATGATGGAACTGTGACACACGTAATAGGTATCCAACTATTTTCTGAAGCAAATATAGATCTGAACCGCGTCTCATACCCAGTCTTCAAAAAGACTTGCAATCAAGATTTCGATAAGACTGGTAAATTCCCTCCTAAGAGTGGACAAACATTGTACAGTCAGCACCAAGAGCTGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTAGCTCACAACATTTTGTCACGTTTGACACCAAGGGACGTTGCATCCATCGGGTCTGTATGCAGGAGGATCCGCCAACTGACAAAGAATGAGCATGTCAGGAAGATGGTGTGTCAAAATGTGTGGGGAAAAGAAGTCACTGGTACCTTGGAATTGATGACCAAGAAGTTAGGATGGGGTCGTCTAACACGGGAACTTACTACTCTCGAGGCAGTTTGTTGGAGAAAACTGACAGTTGGAGGAGCAGTGGAACCTTCACGCTGCAATTTCAGCGCTTGCGCCGCAGGGAATCGTCTTGTACTGTTTGGAGGTGAAGGAGTAGATATGCAACCTATGGATGACACTTTTGTGCTAAATCTTGATGCTAAAAATCCAGAGTGGCGCAGGGTTAGCGTGAAATCATCCCCACCAGGAAGATGGGGCCACACACTCTCTTGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTCCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAGGTCTGCGGTGGAACCCCACCACTTCCAAGATCTTGGCACAGTTCTTGCACAATCGAAGGGTCAAAATTGGTTGTCTCTGGTGGGTGCACAGACGCTGGGGTTCTTCTTAGTGACACGTATCTATTGGACCTTACAACAGGTAATCCAACATGGAGAGAGATTCCAACATCATGGGCGCCACCTCCTCGTTTGGGGCACTCACTGTCAGTCTATGGGAGGACAAAGATTCTTATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGCTTAAGATCAGGGGAGGCTTACACCATTGATCTAGAAGATGAACAACCACACTGGAGACCACTAGAATACAGTGCCTTCACTGGAGTAGCTAGTCAAAGTGCTGTGGTTCCTCCTCCTCGGCTAGATCATGTTGCTGTCAGCATGCCTTGCGGAAGAATAATTGTTTTTGGAGGTTCCATTGCAGGTCTTCACTCACCGTCTCAACTCTTTCTGTTGGATCCGGCTGAGGAGAAGCCTTCATGGAGGATCCTCAATGTTCCGGGGCAACCACCTAAATTTGCTTGGGGTCACAGCACTTGTGTGGTCGGAGGAACAAGGGTTTTGGTGCTGGGCGGACATACTGGAGAGGAGTGGATACTGAACGAGTTGCATGAATTATGCTTGGCAAGTCGACAGGATTCTGACCTGTGA 1890 0.4788 MAMAKEKEEDEEHNHNGGKRLKCMRNEGKEDDAVVAIGEDESELPLKPGIFFYPATPTSVVVCDALEPDFPIIYVNKVFEIFTGYRADEALGRNCRFLQFRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKKTCNQDFDKTGKFPPKSGQTLYSQHQELCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNVWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTGNPTWREIPTSWAPPPRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPHWRPLEYSAFTGVASQSAVVPPPRLDHVAVSMPCGRIIVFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4961 629 Gene3D - 210 260 - -
Amo13g4961 629 Pfam PAS domain 66 166 IPR000014 -
Amo13g4961 629 Pfam Galactose oxidase, central domain 375 422 - -
Amo13g4961 629 Pfam Galactose oxidase, central domain 424 475 - -
Amo13g4961 629 CDD PAS 56 166 IPR000014 -
Amo13g4961 629 Gene3D - 286 515 IPR015915 GO:0005515
Amo13g4961 629 Gene3D - 516 628 IPR015915 GO:0005515
Amo13g4961 629 ProSiteProfiles PAS repeat profile. 72 103 IPR000014 -
Amo13g4961 629 SMART pac_2 131 172 IPR001610 -
Amo13g4961 629 SUPERFAMILY F-box domain 209 268 IPR036047 GO:0005515
Amo13g4961 629 TIGRFAM sensory_box: PAS domain S-box protein 70 166 IPR000014 -
Amo13g4961 629 Pfam F-box domain 216 253 IPR001810 GO:0005515
Amo13g4961 629 Pfam Kelch motif 534 581 IPR011498 GO:0005515
Amo13g4961 629 Pfam Galactose oxidase, central domain 310 360 - -
Amo13g4961 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 57 167 IPR035965 -
Amo13g4961 629 SUPERFAMILY Galactose oxidase, central domain 297 614 IPR011043 -
Amo13g4961 629 MobiDBLite consensus disorder prediction 1 22 - -
Amo13g4961 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 10 626 - -
Amo13g4961 629 Gene3D PAS domain 53 178 - -
Amo13g4961 629 PANTHER ADAGIO PROTEIN 3 10 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4961 Amo-Chr13 148633983 148637454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4961 59 180 AGC Kinase Gene Family AT5G58140 33.871 9.39e-14 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4961 13 148633983 148637454 Amo13g4961 13 148633983 148637454 ECH