Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4954 ATGGAGTCTTCGAAGGCTCTGCGGTTCATAACACACCAATCGTTGTTCTCGACCGTTCGATCTGGGAACCTTGATGAGCTGAAGAAGCTGGTGGAGCAGCTGAGAAAGGAAGAGTCTTGTTCTTGTGCTTCAGATGCATCATCTTCATCGATTTCTGACGTGATGTCCCTTCAGAACGATGCTGGAGAAACCGCTCTTTACATCGCCGCAGACAATAATCTGAAGGACGTGTTCAGCTTCTTGCTCAAACTCTGTGACTTCGAGATAGTGAAGATCAGGTCCAAGTCTGACATGAACGCCTTTCATGTTGCAGCCAAGCGTGGTCATCTTGATATTGTGAGGGAGTTTTTGAGTACTTGGCCAGAGCTTTGTAAGTTATGTGACTCATCAAACACCAGCCCGCTATATGCGGCTGCTGTTCATGATCATCTGGATGTGGTCAATGCTATCTTGGATGTTGACGCCAGTTCCATGATGATAGTTAGGAAAAATGGGAAAACTTCCCTGCACAATGCTGCTAGGTATGGTATGGTTCGAATTGTGAAAGTTCTTATTGCCCGGGATCCAGCAATAGTCTCCATCAAAGATAAAAAAGGTCAAACTGCACTTCACATGGCTGTCAAAGGACAGTGTAGTGCAGTGGTGGAGGAGATATTACAAGCTGATCCAACTATACTGAACGAACGGGACAAGAAAGGCAATACAGCTCTTCACATGGCTACGAGGAAAGGCCGTGAGCAGATTGTGGCCCTTTTGCTATGCTATACCGCCATGGAAGTTAACGCCATCAATAAGCAGCAGGAAACAGCTTTGGATTTGGCAGATAAACTGCCGTATGGAGATCCGTCTTTGGTAATTAAGGAAGCACTTGCAGAGTATGGTGCCAAGCATGCCAGGAATGTCGGAAAAATAGATGAAGCCATGGAACTCAAAAGAACTGTCAGTGACATAAAACATGAGGTGCAGTCACAACTTATACAAAATGAAACTACTCGTAGACGAGTTTCTGGAATTGCCAAGGAACTGAAGAAACTTCATAGGGAAGCAGTTCAGAACACCATTAATTCTGTCACAGTCGTAGCTGTCCTTTTTGCCTCAATAGCATTCCTGGCCATATTCAATTTGCCTGGTCAGTATATAACAGGAGGATCAGATGCAGGGAAGGCCAATATTGCCAATCGTCTTGGCTTCAAAGTTTTCTGCCTTCTGAATTCTACATCTCTCTTCATCTCACTTGCAGTCGTCGTAGTTCAAATCACTTTAGTAGCATGGGACACAAGGGCTCAAAGGCAGGTTGTATCAGTGGTTAACAAGCTAATGTGGGCTGCATGTGCTTGCACATGTGGTGCTTTTCTTGCAATAGCTTTTGAGGTTGTTGGAGAACACACATGGATGGCCTTGACCATCACCATTTTGGGAGTACCAATTCTAGTTGGAACACTAGCAAGCTTGTGCTACTTTGTTTTTCGACAACATTTTGGTGTTTTCCGCAGCGATTCACAGAGGCGAATCAAGAGAGCTAGCGGAAGCAAATCTTTTTCATGGTCGTACTCTGCAAATATATCAGACTTGGACGAATATAATTCCGACATTGAAAAGATCTATGCTCTGTGA 1614 0.4449 MESSKALRFITHQSLFSTVRSGNLDELKKLVEQLRKEESCSCASDASSSSISDVMSLQNDAGETALYIAADNNLKDVFSFLLKLCDFEIVKIRSKSDMNAFHVAAKRGHLDIVREFLSTWPELCKLCDSSNTSPLYAAAVHDHLDVVNAILDVDASSMMIVRKNGKTSLHNAARYGMVRIVKVLIARDPAIVSIKDKKGQTALHMAVKGQCSAVVEEILQADPTILNERDKKGNTALHMATRKGREQIVALLLCYTAMEVNAINKQQETALDLADKLPYGDPSLVIKEALAEYGAKHARNVGKIDEAMELKRTVSDIKHEVQSQLIQNETTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYITGGSDAGKANIANRLGFKVFCLLNSTSLFISLAVVVVQITLVAWDTRAQRQVVSVVNKLMWAACACTCGAFLAIAFEVVGEHTWMALTITILGVPILVGTLASLCYFVFRQHFGVFRSDSQRRIKRASGSKSFSWSYSANISDLDEYNSDIEKIYAL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4954 537 Pfam Domain of unknown function 348 455 IPR026961 -
Amo13g4954 537 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3 537 - -
Amo13g4954 537 Gene3D - 226 311 IPR036770 -
Amo13g4954 537 ProSiteProfiles Ankyrin repeat profile. 164 196 IPR002110 GO:0005515
Amo13g4954 537 ProSiteProfiles Ankyrin repeat region circular profile. 232 253 - -
Amo13g4954 537 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 3 537 - -
Amo13g4954 537 Pfam Ankyrin repeats (3 copies) 66 153 IPR002110 GO:0005515
Amo13g4954 537 Pfam Ankyrin repeats (3 copies) 196 262 IPR002110 GO:0005515
Amo13g4954 537 SMART ANK_2a 130 160 IPR002110 GO:0005515
Amo13g4954 537 SMART ANK_2a 198 227 IPR002110 GO:0005515
Amo13g4954 537 SMART ANK_2a 61 91 IPR002110 GO:0005515
Amo13g4954 537 SMART ANK_2a 96 125 IPR002110 GO:0005515
Amo13g4954 537 SMART ANK_2a 164 193 IPR002110 GO:0005515
Amo13g4954 537 SMART ANK_2a 232 262 IPR002110 GO:0005515
Amo13g4954 537 ProSiteProfiles Ankyrin repeat profile. 232 265 IPR002110 GO:0005515
Amo13g4954 537 SUPERFAMILY Ankyrin repeat 15 277 IPR036770 -
Amo13g4954 537 Gene3D - 11 225 IPR036770 -
Amo13g4954 537 ProSiteProfiles Ankyrin repeat region circular profile. 164 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4954 Amo-Chr13 148579714 148582106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4954 5 537 Miscellaneous Gene Families AT2G01680 70.522 0.0 753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4954 13 148579714 148582106 Amo13g4954 13 148579714 148582106 ECH