Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4951 ATGGCTACTTCGAAGGCGGTTATGGCTTCCTTGACGCACCTGCGTCCGCTAACATGCGCCGCCTCATCGTCCTACCCTGCGCGACTGGTTCCCCACCCACCGGACCTCATCAAGTGGGTCACCAGAGAAGGCGGCTTCGTCCACCCTGCCATCAAGATAGCGCTTCATCCCTCCCACGGTCTCGGCTTACTCGCCAACCAACAAATCCCCAAGGGTTCCGACCTTATCGTTCTCCCCGACCACATTCCCTTGAGGTTTAACCACCAAGACGTCACCCACTCTCTCCTCCTTCAATTGGCACGCCATGTTCCTGAGGAACTGTGGGCCATGAGGCTAGGTTTGAAGCTGCTTCAAGAAAGAGCTAAAGTTGGATCCTTTTGGTGGCCATACATCAGCAATCTCCCGGAAACATACACTGTCCCTATCTTCTTCCCCGGAGAGGATATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTGAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCATTCCTTAGTCAATCTCACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCATCAAGAGCATTCCGTTTATATGGTGACAAACGGCCAGATGGGATCCATATTGACATACCTATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCCAGAATTGTTCAGGAAAAAGACTCTAGTAGCATAAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTAACTATGGCTGTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACAATCAAACCCGTATGACTGCATTGAACTGAAATACGATGGTGCTCTTTTGGATGCTGCAAGCTCAGCAGCTGGAGTTTCATCACCAAATTTCTCAGCACCTGCTCCATGGCAGGAACAGATTCTTGTTCAGCTAAATCTTGCTGGGGAAGCTTCAGATCTCAAGGTGAGCATAGGTGGTGAAGATGTAGTAGAGGGGCGTTTGTTGGCGGCATTGAGAGTACTCCTTTCAAGTAGTATGGAAACCGTACAGAAGCATGACCTCAACACACTCAAGTCTTTATCAGCCGAAGCCCCGCTGGGTGTTGCAAATGAAACAGATGTCTTGCGTACGCTTATAGCTCTGTGTGTGATTGCACTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAACAGGGTGCCTTAGGTTCAACGGAATTGGCCATTCAATACAGAATCCAAAAGAAATCTGTGATTGTTGATGCCATGAGATCTCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAAGGAAACAACAGTGAGTGCCGAAGGCTAA 1425 0.4681 MATSKAVMASLTHLRPLTCAASSSYPARLVPHPPDLIKWVTREGGFVHPAIKIALHPSHGLGLLANQQIPKGSDLIVLPDHIPLRFNHQDVTHSLLLQLARHVPEELWAMRLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKHSLVNLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGDKRPDGIHIDIPMMLPLIDMCNHSFNPNARIVQEKDSSSIKMQVKVVAETAIKEDDPLLLNYGCLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASSAAGVSSPNFSAPAPWQEQILVQLNLAGEASDLKVSIGGEDVVEGRLLAALRVLLSSSMETVQKHDLNTLKSLSAEAPLGVANETDVLRTLIALCVIALGHFPTKIMDDESLLKQGALGSTELAIQYRIQKKSVIVDAMRSLSRRVKLLSSKETTVSAEG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4951 474 ProSiteProfiles SET domain profile. 49 278 IPR001214 GO:0005515
Amo13g4951 474 Gene3D set domain protein methyltransferase, domain 1 3 291 - -
Amo13g4951 474 Gene3D - 325 469 IPR036464 -
Amo13g4951 474 PANTHER F21J9.27 5 469 - -
Amo13g4951 474 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 469 - -
Amo13g4951 474 Pfam SET domain 60 278 IPR001214 GO:0005515
Amo13g4951 474 Pfam Rubisco LSMT substrate-binding 326 448 IPR015353 -
Amo13g4951 474 SUPERFAMILY SET domain 31 296 IPR046341 -
Amo13g4951 474 CDD SET_LSMT 50 292 - -
Amo13g4951 474 SMART set_7 49 284 IPR001214 GO:0005515
Amo13g4951 474 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 468 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo13g4951 SET 5.7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4951 13 148537489 148541046 Amo13g4951 13 148537489 148541046 ECH