Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4945 ATGGACGACGTTAAAGATAAGATGAAAGGCTTCATGAAGAAAGTCAACAACTCTTTCACCTCTTCATCCTCCGCCAAATTCAAGGGMCAAGGTCGYGTCTTGGGATCTTCTTCTTCTCCCTCTCCTCCTCCCTATGCAACCGCTAATTCCACTTCCACCCCTCGCCCTCGCCCCCTCAATTCCAATCCCACGCCCCCKCCCCACAAAGCCACCGCCTCTTCCGSCGAGAGGGATCSCAAACCTCCAACTTCTGGGTTCGACCCATTTGATTCATTCGTCACATCATCCAAGAGATCTCAAAACGGGTATTCACTTAATGTATATGAGTGTCCTGTTTGTGGCAATTCTTTTAGATCCGAAGATGAGGTTTCKGAGCATGTGGACACTTGTTTGAGTAACAACGSTGAGCGTGSTGATGTGTCTCAATTGSCAGACACTGGAGCCGACTCCAATGCTGAATTGGAGGTTTGTGTTGGCACTTACGTCTCAGGGAAGCCTTCCCACGGATCCATCGACATTCTTTTGAAGCTGTTGAAGAATGTTGTTAGAGAGCCTGARAATGCCAAGTTTAGGAAGATCAGATTGGSCAATCCTAAAATTAAGGAGGCTRTTGCCGAGGTTATCGGTGGAACTGAGTTGATTTGCTTTCTTGGCTTTGAACTTAAGGACGAGAATGGCGAGACTTGGGCCGTCATGGAGCTTCCTTCAGARGAGCAGATAAGATTGATCAAGAAAGCAACACTGTTGCTGGAATCACAGCTGGTGCTGCAAGTATCTCCAAAGAGTGAGAATTTGGCTGCAGCTTCTGCTGACAACATAGATGCAAAACCTGAATCCAAGCCTATCGACAGACAGGTGAAGGTCTTCTTTGCCGTTCCTGAAACTATTGCAGCAAAAATTCAGCTACCAGATTCCTTCTATAAACTTTCAGTTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATTCCCAAGTCATTAAAGGAAAAGCAAGCAAAAGCTGCCAAGAAGAGATACACAAAAGCTATTATTAGGRTTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTTCTCCATGGGAACCAACTATGGCCCTCTATGAGTTTGTCAGTTCTGCATTGAAACAACCAGGTTTGGAGTTTGAGCTAATGCATCCGGTAGTAGTCCGACGGCAGGCAATCCCTCGGTTCGCCAAAGCAGGGGAGAACAGTAAAACATTGGAGGATGAGGACTTGGTACCTTCAGCTCTAATCAAGTTCAAGCCACTGGAAACAGATTCTGTTGTTTTCACGGGTCTCAAAAACGAATTGCTTCAAATCAGTGAGCCGCTTGTAAATGCTTAA 1374 0.4491 MDDVKDKMKGFMKKVNNSFTSSSSAKFKGQGRVLGSSSSPSPPPYATANSTSTPRPRPLNSNPTPPPHKATASSXERDXKPPTSGFDPFDSFVTSSKRSQNGYSLNVYECPVCGNSFRSEDEVSEHVDTCLSNNXERXDVSQLXDTGADSNAELEVCVGTYVSGKPSHGSIDILLKLLKNVVREPENAKFRKIRLXNPKIKEAXAEVIGGTELICFLGFELKDENGETWAVMELPSEEQIRLIKKATLLLESQLVLQVSPKSENLAAASADNIDAKPESKPIDRQVKVFFAVPETIAAKIQLPDSFYKLSVEEVRREAELRRKKIEESQLLIPKSLKEKQAKAAKKRYTKAIIRXQFPDGVVLQGVFSPWEPTMALYEFVSSALKQPGLEFELMHPVVVRRQAIPRFAKAGENSKTLEDEDLVPSALIKFKPLETDSVVFTGLKNELLQISEPLVNA* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4945 457 SUPERFAMILY PUG domain-like 165 253 IPR036339 -
Amo13g4945 457 SUPERFAMILY Ubiquitin-like 317 430 IPR029071 -
Amo13g4945 457 Gene3D - 163 253 - -
Amo13g4945 457 ProSiteProfiles UBX domain profile. 346 430 IPR001012 GO:0005515
Amo13g4945 457 Pfam PUB domain 168 243 IPR018997 -
Amo13g4945 457 Gene3D Classic Zinc Finger 104 134 - -
Amo13g4945 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 138 IPR013087 -
Amo13g4945 457 MobiDBLite consensus disorder prediction 14 57 - -
Amo13g4945 457 Gene3D - 340 433 - -
Amo13g4945 457 SMART PGNneu 169 236 - -
Amo13g4945 457 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 456 - -
Amo13g4945 457 MobiDBLite consensus disorder prediction 1 93 - -
Amo13g4945 457 CDD PUB 163 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4945 Amo-Chr13 148480056 148482422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4945 1 378 C2H2 Transcription Factor Family AT2G01650 54.774 5.27e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g4945 PUB 9.6e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4945 13 148480056 148482422 Amo13g4945 13 148480056 148482422 ECH