Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g4503 ATGGTTTTGTCTTGGACCAAAAGAAAGGTCTTCCGCCATCTCCGTAAGGTGACAAAGGAGGATCAACCTCCCTCCGCCGATGAGATTGTCATCCCCGTACACTTTTGCTGCCCAGTGAGCTTGGACATTATGAAAGACCCCGTTACCCTCTCAACCGGCATAACCTACGACAGGGACAGCATCGACAAGTGGCTTGAATCCGGTAACAACACCTGCCCCGTCACCAAACAGCTCCTAACTACCTCCGACATGATCCCCAACCACGCCATCAGAAAGATGATTCAGGATTGGTGCGTCGATAACAGCTCCCATGGCGTCCAGAGGATCCCCACTCCTAGGGTTCCCCTTTCCAGATACGACGTTTCCCGGGAATGTAAGACCTTGTTGTCCGGTTCACAGCGCGGTGATGATGCCACGTGTCGGGAATCTTTGGCCAAGATCAAGGCTTGGGGGAAGGAGAACGAGAGGAACAAGAGGTGCGTCGTTGGCAACGGTTCCGCTGATGTACTCGCACGTGCGTTTCAGAATTTCTCACGTGATTCGTTCGACAAGCACGTGGTTGTCTTGGCAGAGATTTTGGAGAATCTGACGTGGATGCTTCCTATTGGCGAAGAGGGTAAAGGGTGTTTGGGCTCGGAAAATTCGTTGACCCGGTTGGTTTTGTTCCTAGGTGGTAATGACCTTGGAGCAAGACAAAGTGCTTCTTTGGTGATTAAGGAGCTAAGTGCTGAAGCACTGGAGAAAAATGAACAACTTGTTGAGTCTTTGGTTAAGATGATTAGGGAGCCAATTGGTCCAATTGCTACAAAATCATGTTTGGCCACAATTTTCAATTTGGTTTCATTAGCACAAAGTAGAGAACTAATTGCAGAGAGATTTGTGGAATTAGGTTTGGTCTCATTGCTGTTGGATATCATTCTTGATGGTGAAAGAGGGATAACTGAGAAGGCATTGGGGGTCTTGGATTCCATTTGTGATTTCCAAAAGGGGAAGGATTTTGCCAAGAGCAATGCTCTAATGGTTCCCCTTGCAATCAAGAAGATCTTGAGGGTGTCAGAATTGGCCTCTAGCTTTGCGGTTTCTATACTTTGGAAGGTGTGGGATAAGAGTGATGAAGGGGCTCTGATTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAATTGTTGGTTGTGTTGCAAGTTGGTTGTGATGATAGCACTAAGGAGAAGGCTACTGAGTTGCTCAAACTGTTGAATGCTTATCGAGGCAAGGCACAGTGTGTTGATTCTTCTTCATTGGAACTCAACTACCTTAAGAAGTCATTCTAA 1305 0.472 MVLSWTKRKVFRHLRKVTKEDQPPSADEIVIPVHFCCPVSLDIMKDPVTLSTGITYDRDSIDKWLESGNNTCPVTKQLLTTSDMIPNHAIRKMIQDWCVDNSSHGVQRIPTPRVPLSRYDVSRECKTLLSGSQRGDDATCRESLAKIKAWGKENERNKRCVVGNGSADVLARAFQNFSRDSFDKHVVVLAEILENLTWMLPIGEEGKGCLGSENSLTRLVLFLGGNDLGARQSASLVIKELSAEALEKNEQLVESLVKMIREPIGPIATKSCLATIFNLVSLAQSRELIAERFVELGLVSLLLDIILDGERGITEKALGVLDSICDFQKGKDFAKSNALMVPLAIKKILRVSELASSFAVSILWKVWDKSDEGALIEALQVGAFQKLLVVLQVGCDDSTKEKATELLKLLNAYRGKAQCVDSSSLELNYLKKSF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g4503 434 SUPERFAMILY RING/U-box 19 106 - -
Amo13g4503 434 CDD RING-Ubox_PUB 35 77 IPR045210 -
Amo13g4503 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
Amo13g4503 434 Gene3D - 120 412 IPR011989 -
Amo13g4503 434 PANTHER WDSAM1 PROTEIN 28 434 IPR045185 GO:0061630
Amo13g4503 434 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Amo13g4503 434 SUPERFAMILY ARM repeat 185 412 IPR016024 -
Amo13g4503 434 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Amo13g4503 434 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Amo13g4503 434 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g4503 Amo-Chr13 141649741 141652272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g4503 20 434 U-box Gene Family AT5G37490 46.209 1.15e-115 343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4503 13 141649741 141652272 Amo13g4503 13 141649741 141652272 ECH