Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2392 ATGACTGGCAGAGAAATCCTCCACAAGATGAAGGAAAAAGTGTTGGGGTCATCAGATCCTGATTCAGGGAAAGGAAAGAGCAAGATGTCTAAGAACATAACTCATGGCTTCCATTTGGTAAAGGGAAGATCAGATCATGCTATGGAAGACTATCTTGTTGCTCAATTTAAGCAAGTCGAAAATAATGAGTTGGGTTTGTTTGCAATATTTGATGGCCACTCTGGTCACAGTGTACCTGATTACTTGCGGTCTCATTTGTTCGATAACATCATAAATGAGCCTGACTTCTGGACAGACGCTGCTAATGCTGTGAAGAGAGCCTATAGTGTAACTGATTCTACTATTTTGGAGAAATCAGGTGAATTGGGCAGAGGGGGTTCAACTGCTGTTACAGCAATATTGATTAATTGTCAGAAGCTAATAGTGGCTAACATTGGGGACTCTCGGGCTGTCTTATCGGTGAATGGCAAGGCCAAACAACTATCTGTGGATCATGAACCAAACACAGAATGGGAGGACATCAAGAACAGAGGTGGTTTCGTTTCTAACTTCCCAGGGGATGTTCCACGGGTTGATGGGCAATTGGCAGTGTCGAGGGCATTCGGTGACAAAAGCCTGAAGAAACACTTGAGCTCTGATCCATATGTGACAGTGGAGCTCATAGGTGATGGTGCAGAGTTTATCATATTAGCCAGTGATGGTTTATGGAAGGTAATGTCAAATCAAGAAGCAGTTGATGCTATCAAAGACATAAAAGATGCTCGGTCTGCAGCAAAACACCTTACTGAAGCAGCAGTTAACAGGAAAAGCTCAGATGATATCTCTTGTGTTGTTGTGAGATTTCAGTGA 849 0.4287 MTGREILHKMKEKVLGSSDPDSGKGKSKMSKNITHGFHLVKGRSDHAMEDYLVAQFKQVENNELGLFAIFDGHSGHSVPDYLRSHLFDNIINEPDFWTDAANAVKRAYSVTDSTILEKSGELGRGGSTAVTAILINCQKLIVANIGDSRAVLSVNGKAKQLSVDHEPNTEWEDIKNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKKHLSSDPYVTVELIGDGAEFIILASDGLWKVMSNQEAVDAIKDIKDARSAAKHLTEAAVNRKSSDDISCVVVRFQ* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2392 282 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 282 - -
Amo13g2392 282 Gene3D - 16 282 IPR036457 -
Amo13g2392 282 SUPERFAMILY PP2C-like 30 281 IPR036457 -
Amo13g2392 282 Pfam Protein phosphatase 2C 45 274 IPR001932 -
Amo13g2392 282 CDD PP2Cc 35 281 IPR001932 -
Amo13g2392 282 SMART PP2C_4 24 279 IPR001932 -
Amo13g2392 282 PANTHER PROTEIN PHOSPHATASE 2C 1 282 IPR015655 GO:0004722|GO:0006470
Amo13g2392 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2392 Amo-Chr13 41719216 41724885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2392 1 282 PP2C-type Phosphatase Gene Family AT3G15260 74.394 3.67e-159 442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1631 18 32443099 32445606 Amo13g2392 13 41719216 41724885 PCT
Amo08g1630 08 26836978 26839144 Amo13g2392 13 41719216 41724885 PCT
Amo13g2392 13 41719216 41724885 Amo18g1631 18 32443099 32445606 PCT
Amo13g2392 13 41719216 41724885 Amo08g1630 08 26836978 26839144 PCT