Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2309 ATGATGAAGCCTTCGATGCTCAGATCCCTCCACTCAGCCGTCTCCCGCCGCTCCTCTCACCTCGCTCGCCGTGGGTACTCCTCCGAGTCGACCCCCGAGCGCAAGGTCGTTGTTCTCGGGGCCGCCGGCGGCATCGGCCAGCCCCTATCCCTCCTCATGAAGCTCAACCCACTCGTGACTAGCCTCTCCCTTTACGATATCGCCGGCACGCCCGGCGTCGCCGCTGATGTCAGCCACGTCAACACCAGATCTGAGGTCGCTGGATATCAAGGCGAAGGAGAGCTTGGAAAAGCTTTGGAGGGAGCTGATGTCGTTATAATCCCAGCTGGTGTTCCCAGGAAGCCTGGAATGACTCGCGATGATCTCTTCAACATTAATGCCGGCATTGTCAAGTCTCTGTGCACTGCTATTTCCAAGTACTGCCCCACGGCCCTTGTTAACATGATTAGCAATCCTGTGAACTCCACTGTTCCCATTGCTGCCGAGGTTTTCAAGAAGGCAGGGACATATGATGAGAAGAGGTTGTTTGGGGTCACCACCCTTGATGTTGTTAGGGCAAAAACTTTTTATGCTGGAAAGGCCAATGTTCCGGTTGCTGGGGTCAATGTACCGGTTATAGGTGGCCATGCAGGCATCACTATTCTGCCATTATTTTCTCAAGCAACACCGAAAGCCAATTTGGATCATGATGTCATAGTAGCTCTTACGAAGAGAACACAAGATGGTGGAACGGAAGTTGTTGAAGCCAAGGCGGGAAAGGGTTCTGCAACTTTGTCAATGGCTTATGCCGGAGCTCTCTTTGCTGATGCTTGTCTCAAGGGCCTCAATGGTGTCCCAGATGTTGTTGAGTGTTCGTTTGTGCAATCTAATGTTACTGAACTTCCTTTCTTCGCTTCAAAGGTGAGACTCGGAAAGAATGGTGTGGAGGAAGTTCTGGGATTGGGGGCTCTTTCAGATTATGAGAAACAAGGCCTTGAAAACCTTAAGCCCGAGCTCTTGGCATCTATTGAGAAGGGAATCAAATTCGCCAACCAATAA 1038 0.5125 MMKPSMLRSLHSAVSRRSSHLARRGYSSESTPERKVVVLGAAGGIGQPLSLLMKLNPLVTSLSLYDIAGTPGVAADVSHVNTRSEVAGYQGEGELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAISKYCPTALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAGVNVPVIGGHAGITILPLFSQATPKANLDHDVIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSNVTELPFFASKVRLGKNGVEEVLGLGALSDYEKQGLENLKPELLASIEKGIKFANQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2309 345 PIRSF Lac_mal_DH 30 342 IPR001557 GO:0016616|GO:0019752
Amo13g2309 345 ProSitePatterns Malate dehydrogenase active site signature. 178 190 IPR001252 GO:0006108|GO:0016615
Amo13g2309 345 Gene3D - 33 178 - -
Amo13g2309 345 CDD MDH_glyoxysomal_mitochondrial 35 343 IPR010097 GO:0006099|GO:0030060
Amo13g2309 345 PANTHER MALATE DEHYDROGENASE 2 344 - -
Amo13g2309 345 MobiDBLite consensus disorder prediction 1 28 - -
Amo13g2309 345 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 179 342 IPR022383 GO:0016616
Amo13g2309 345 Pfam lactate/malate dehydrogenase, NAD binding domain 35 177 IPR001236 GO:0016491
Amo13g2309 345 Gene3D - 179 344 IPR015955 GO:0003824|GO:0016616
Amo13g2309 345 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 35 344 IPR010097 GO:0006099|GO:0030060
Amo13g2309 345 PANTHER MALATE AND LACTATE DEHYDROGENASE 2 344 - -
Amo13g2309 345 SUPERFAMILY LDH C-terminal domain-like 178 344 IPR015955 GO:0003824|GO:0016616
Amo13g2309 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 177 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2309 Amo-Chr13 39754223 39757311 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2309 13 39754223 39757311 Amo13g2309 13 39754223 39757311 ECH
Amo13g2309 13 39754223 39757311 Amo03g0171 03 3074124 3076749 hybridization