Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1352 ATGGCAGCTACTAGTAGGAACATTGAGAAGATGGCTTCAATTGATGCTCAGCTGAGGTTGCTGGCACCAAGGAAGGTTTCTGATGATGACAAGCTTGTTGAGTATGATGCTTTGTTGCTTGATCGATTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGGCAAACGGTTCAAGATTGTTATGAGCTTTCAGCTGAGTATGAAGGGAAGCATAAGACTGAGAAGTTGGAGGAACTTGGGAATATGCTAACTGGTCTTGATGCTGGGGATTCTATTGTCATTGCCAAATCATTTTCCCACATGCTTAATTTGGCTAACTTGGCAGAAGAAGTCCAAATTGCCTACCGAAGAAGGATTAAGCTATTAAAGAAGGGCGATTTTGCTGATGAGAACTCTGCCATCACTGAATCTGACATTGAAGAAACCTTCAAGAGGCTTGTGACTGAACTGAAGAAGTCCCCACAGGAAGTGTTTGATGCTTTGAAGAACCAAACTGTAGATTTGGTCCTAACTGCTCATCCCACTCAGTCCATTCGTCGATCTCTGCTGCAAAAGCATGGAAGGATAAGGAACTGTCTGACACAGTTGTATGCGAAAGACATAACACCGGATGATAAGCAGGAACTTGATGAGGCTCTCCAAAGAGAGATTCAAGCTGCATTTCGCACAGATGAAATTCGAAGGAGTCCTCCAACACCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATATGGAAAGGTGTACCAAAGTTTTTGCGCCGTGTTGACACAGCTCTGAAGAACATCGGAATAAATGAGCGTGTCCCATACAATGCCCCTCTTATTCAATTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAACCCTAGGGTAACCCCTGAAGTTACAAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATTTATACTTCTCTCAGATAGAAGATCTCATGTTTGAGTTGTCTATGTGGCGCTGCAATGATGAGCTTCGTGTTCGTGCTGATGAACTCCATGTGTCCTCAAGGAGAGATGCAAAACATTACATTGAATTTTGGAAGCAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTGAGGGACAAACTATACAATACACGCGAACGTGCTCGCCAGTTATTAGCCAATGGAACCTCTGACATCCCCGAAGAGACAACCTTCACAAATGTTGAGCAGTTCCTGGAGCCCCTTGAACTCTGCTATAGATCACTCTGCGCATGTGGTGATCGACCAATAGCAGATGGTAGCCTTCTTGATTTCTTGCGGCAAGTTTCCACATTTGGACTCTCAATGGTAAGACTCGACATTCGTCAAGAGTCAGACCGGCACACTGATGTCATGGATGCCATTACCAAACACTTGGAGATTGGATCATACCGAGAGTGGTCTGAGGAACGCAGGCAGGAATGGCTTCTGTCAGAGCTCAGTGGAAAGCGCCCTCTGTTCGGCCCTGATCTTCCCAAAACAGAAGAGATCGCCGATGTTCTGGAAACCTTCCATGTCATTGCAGAACTTCCCTCAGACAACTTTGGTGCCTACATAATCTCAATGGCAACAGCACCGTCTGATGTGCTTGCTGTTGAGCTCTTACAACGGGAATGCCATGTGAAGCAACCGCTAAGGGTYGTGCCATTGTTTGAAAAGCTTGCTGATCTTGAGTCTGCTCCTGCTGCAGTGGCGCGGCTTTTCTCTATTGATTGGTACAGAAACCGAATCAATGGGAAGCAAGAAGTTATGATAGGATACTCAGACTCAGGAAAAGATGCCGGTCGTCTTTCTGCGGCTTGGGCGCTGTACAAGGCTCAAGAGGAGCTCATAAAGGTTGCRAAGGATTTCGGTGTTAAGCTGACAATGTTCCATGGCAGAGGAGGGACTGTTGGAAGAGGAGGCGGCCCCACTCACCTTGCTATATTATCTCAGCCACCAGAAACCATTCATGGCTCACTTCGGGTGACAGTTCAAGGTGAAGTTATTGAACAATCCTTTGGAGAGGAGCACTTGTGCTTTAGAACTCTCCAGCGATTCACTGCTGCTACACTTGAGCACGGAATGCACCCTCCCGTGTCACCCAAACCGGAATGGCGAGTGCTGCTAGATGAGATGGCTGTCATTGCAACGAAGGAGTATCGCTCCATTGTTTTCCAGGAACCCCGTTTTGTTGAATACTTCCGATGTGCTACCCCTGAGTTGGAGTATGGACGAATGAACATTGGAAGTCGTCCATCAAAGAGAAAGCCGAGTGGAGGAATCGAATCACTGCGTGCTATTCCATGGATTTTTGCTTGGACACAAACAAGGTTTCATTTGCCAGTGTGGCTTGGCTTTGGTTCTGCATTTAAGCATGCAATTGAGAAGGATCCAAAGAATCTCCTAATGCTTCARGATATGTACAACCAGTGGCCTTTCTTCAGGGTCACCCTGGACTTGATCGAGATGGTGTTCGCCAAGGGAGACCCGGGGATCGCTTCCCTGTACGACAAACTCCTAGTGTCAGAAGAGCTGTTGCCATTCGGAGAGCGCTTGAGGACTAAATATGAAGAAACCAAGAGTTTTCTCCTTMAGGTTGCTGGGCACAGGGATCTTCTTGAAGGTGACCCCTACTTGAAGCAAAGGCTTCGTCTCCGCGATTCATACATCACAACCCTGAATGTGTTACAAGCCTACACGTTGAAGAGAATCCGCGACCCCGACTACCATGTCAAGTTGAGGCCACATTTGTCAAAGGAATTCATGGAATCAAGCAAGCCAGCTGCAGAACTTGTTAAACTCAACCCAAAAAGTGAGTATGCTCCTGGTTTGGAGGACACACTTATCTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAACACAGGTTAA 2907 0.4644 MAATSRNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGKHKTEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKRLVTELKKSPQEVFDALKNQTVDLVLTAHPTQSIRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRADELHVSSRRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGTSDIPEETTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSMVRLDIRQESDRHTDVMDAITKHLEIGSYREWSEERRQEWLLSELSGKRPLFGPDLPKTEEIADVLETFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLESAPAAVARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELIKVAKDFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRVLLDEMAVIATKEYRSIVFQEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGSAFKHAIEKDPKNLLMLQDMYNQWPFFRVTLDLIEMVFAKGDPGIASLYDKLLVSEELLPFGERLRTKYEETKSFLLXVAGHRDLLEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKEFMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1352 968 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 171 182 IPR018129 -
Amo08g1352 968 PRINTS Phosphoenolpyruvate carboxylase signature 283 298 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 PRINTS Phosphoenolpyruvate carboxylase signature 443 463 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 PRINTS Phosphoenolpyruvate carboxylase signature 634 663 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 PRINTS Phosphoenolpyruvate carboxylase signature 170 183 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 PRINTS Phosphoenolpyruvate carboxylase signature 592 612 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 PRINTS Phosphoenolpyruvate carboxylase signature 223 239 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 PRINTS Phosphoenolpyruvate carboxylase signature 766 792 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 Gene3D Phosphoenolpyruvate/pyruvate domain 311 446 - -
Amo08g1352 968 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 594 606 IPR033129 -
Amo08g1352 968 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 5 968 - -
Amo08g1352 968 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 35 968 IPR015813 GO:0003824
Amo08g1352 968 Pfam Phosphoenolpyruvate carboxylase 38 968 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 5 968 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo08g1352 968 Hamap Phosphoenolpyruvate carboxylase [ppc]. 25 968 IPR022805 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1352 Amo-Chr8 21991252 21996179 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2331 13 40079176 40097742 Amo08g1352 08 21991252 21996179 PCT
Amo03g0139 03 2569814 2577674 Amo08g1352 08 21991252 21996179 PCT