Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2397 ATGGATAAGATGATAGCTTCAGAGATGGACCAACATAGACAAGKTTATTTTCATTCAGAACCCGGTATCCTTCCAAGAGGCACTGGCATCTCGCATCCTAATATCCGTACRATTGTGGCAGCTTCCGGGAGCACAAGTAATCATGATTCCCACTATTTACCACCAGATGCSTATGACAATGGCGTATATGTGACACAGTATAACGGGGTTCAACCGCAACATAATCGTAACATGGWCGTTGCAGCYACGCYGAATTTATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGTGTATTCCCTATGCCTCTAAATCATAGAGGCTCTGATCAATTGCCTGGTTCGGGCCCGTATGCAGTGTCTTTAGTTTCTTCGGATAATTTTGGAAGAAGCAGCAGYTTCATGGATGATGTCAGAGGTCCSTACAAGAGGAAAAGTGCTGAAGGCATGAGAGGAAATTATCAGTATTTTAATGCTCCGGCTAGTTCCTCAACTGCTCCCCCTAATGCTAGGCATGCCGACGGGGTTCCGGTRATGGATACTGCGTCTTTTCCTCTGCGYGTCCCTTCRTTTGTGGAAGTAGGACCACATGGTAATGCATGGAGCAGATCAGGTGATTCCATTATGGTGCACGATCATAACCATTTGATTCGAGGAAACTATGTAGGGCAGCACTTTCAGCCGGCAGCACCTCCGTGGTTGGACCAGCAGTTGAATAGTAATAACAACGATGGTCATACAACAGCATGGAATCAGTCTCTTCCAATGCCTTATATGCATGCTCCAAATGTTAATGGAGGTTCAATAGAGAGTGCAAGTATGGGTTTGCCAAGGTATCACGAAACAGCGAGCAACAGAAACGGCCTTAGATTTCCTCATCCTCCTCCGGTCAATCACCAGCACCATAATTATCATCATCCGGCACTGCCTATGCAAGGAGTAAGAGGTCACGGTGTTAACTTCCACCCTCCTGTAACTGCGGCTTCATTCAGAGTTCCAACAAATCCCTCACACGGTGCTGCAATGCCCACGCCTAATGGTTTCGAGATGGGCCCTAGGCATGTGGGCCCTGTGCCATCAGGAGGCCTACGCATCTACCGACCTCATAGGGGAGTCATGCATGATACTATTGGTCACCGAAATATCCCCCCCATGGGTTTCCTTCATGTTGATGATGTCGCTTTAATCGACGAGGTGGGAAATTTGGTTGACCATCACCGAGACATGCGCATGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATCGGCAACGTAAGCACTGGTTTATCAGAGGAAACAATTGCGGCCCAATTGAAAACAAAATCATATTCCAAACCGATTTCTGCTACTAATTCAGATGAGGCAGCCTTGGACGACCGCGAAGCTGATTCTTGCATTATATGCCAGGATGAATACAAGAACAAAGAGAAGATCGGAGTTCTGCGATGCGAGCACGAGTACCATGCGGATTGCTTGAGGAAGTGGTTGATTGTGAAGAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGGGAAGGATGTATAG 1572 0.4663 MDKMIASEMDQHRQXYFHSEPGILPRGTGISHPNIRTIVAASGSTSNHDSHYLPPDAYDNGVYVTQYNGVQPQHNRNMXVAATXNLYYSGMNPSSSTGVFPMPLNHRGSDQLPGSGPYAVSLVSSDNFGRSSSFMDDVRGPYKRKSAEGMRGNYQYFNAPASSSTAPPNARHADGVPVMDTASFPLRVPSFVEVGPHGNAWSRSGDSIMVHDHNHLIRGNYVGQHFQPAAPPWLDQQLNSNNNDGHTTAWNQSLPMPYMHAPNVNGGSIESASMGLPRYHETASNRNGLRFPHPPPVNHQHHNYHHPALPMQGVRGHGVNFHPPVTAASFRVPTNPSHGAAMPTPNGFEMGPRHVGPVPSGGLRIYRPHRGVMHDTIGHRNIPPMGFLHVDDVALIDEVGNLVDHHRDMRMDIEDMSYEDLLALGERIGNVSTGLSEETIAAQLKTKSYSKPISATNSDEAALDDREADSCIICQDEYKNKEKIGVLRCEHEYHADCLRKWLIVKNVCPICKSEALTPGGKDV* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2397 523 MobiDBLite consensus disorder prediction 233 254 - -
Amo07g2397 523 Pfam Ring finger domain 469 512 IPR001841 -
Amo07g2397 523 SUPERFAMILY RING/U-box 464 517 - -
Amo07g2397 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Amo07g2397 523 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 520 - -
Amo07g2397 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 520 IPR045191 GO:0061630
Amo07g2397 523 SMART ring_2 471 511 IPR001841 -
Amo07g2397 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 516 IPR013083 -
Amo07g2397 523 MobiDBLite consensus disorder prediction 282 362 - -
Amo07g2397 523 MobiDBLite consensus disorder prediction 232 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2397 Amo-Chr7 71015868 71019645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2397 388 516 C3H Transcription Factor Family AT2G15530 44.030 9.69e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1677 18 33937822 33941597 Amo07g2397 07 71015868 71019645 hybridization
Amo07g2397 07 71015868 71019645 Amo03g0030 03 705619 707409 PCT
Amo03g0030 03 705619 707409 Amo07g2397 07 71015868 71019645 PCT