LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo07g2351	ATGGCGAATAGGAATTTGGAGAAGATGGCATCAATTGATGCACAGTTGAGGCAATTGGCACCAGCAAAAGTGAGTGAGGATGATAAACTTATTGAGTATGATGCTCTTCTTTTGGATCGCTTCCTTGATATTCTTCAAGATTTACATGGTGAAGATCTCAGAGAAACGGTTCAAGAAGTGTATGAGCTTTCTGCTGAGTATGAAGGGAAGCATGATCCTAAGAAACTTGAAGAACTTGGCAAAGTGATAACCAGTTTAGATGCCGGGGACTCTATCGTCGTAGCCAAGTCCTTCTCACACATGCTTAACCTTGCCAACTTAGCCGAAGAAGTTCAGATTGCTCATCGCCGAAGGAACAAGTTGAAGAAGGGTGATTTTGTGGATGAGAACAATGCAACCACTGAATCAGACATTGAAGAAACTCTCAAGAAACTTGTATTGAACCTGAAGAAGTCCCCTCAGGAAGTTTTCGATGCGCTGAAGAACCAGACAGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCCATTCGTAGATCATTGCTTCAAAAGCATGGAAGGATCCGGAATTGTTTATCTCAGCTGTACGCCAAAGACATCACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTGCAGAGGGAGATTCAAGCTGCATTTCGAACGGACGAAATCAGGAGAACTCCTCCAACACCACAAGATGAGATGAGAGCAGGAATGAGCTACTTCCACGAAACAATTTGGATGGGCGTGCCGAAATTTCTGCGTCGGCTCGACACAGCTTTGAAGAACATAGGGATAAATGAGCGTGTACCTTACAATGCTCCTCTTATTCAATTCTCATCTTGGATGGGTGGTGATCGCGATGGTAATCCAAGAGTGACTCCTGAAGTGACAAGGGATGTTTGCTTACTAGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAACTGTCTATGTGGCGCTGCAACGATGAGCTACGCGTTCGCGCGGACGAACTTCACGGATCATTCAAGAAAGATGAAGTTGCAAAACACTATATAGAATTCTGGAAAAAGATTCCGGCAAATGAACCGTATCGTGTGATACTGGGTGATGTGAGGGATAGACTGTACAAGACTCGGGAGCGGTCTCGCCATTTACTCGCTCAGGGGTACTCTGACATTCCAGAGGAAGCAAGTTTCACCAATGTGGAGGAGTTCCTGGAGCCTCTTGAGCTATGTTACAGATCACTGTGTGCTTGCGGCGATCGCGCAATTGCTGACGGGACCCTTCTTGATTTCTTAAGACAAGTTTCCACCTTCGGACTGTCACTAGTAAGGCTTGACATCAGGCAAGAGTCGGACCGTCACACGGACGTGATGGACGCCATCACAAAGCATTTGGGAATCGGATCCTACCAGGAATGGTCGGAGGAGAAGAGACAAGAGTGGCTTCTAGAAGAATTAAGCGGGAAGCGACCGTTGTTTGGACCTGACCTTCCAACAACTGAAGAAATCAGAGACGTTCTGGACACATTTCATGTCATAGCAGAGCTTCCAGCAGATAACTTCGGAGCCTATATCATATCAATGGCAACCGCACCGTCCGATGTGCTGGCGGTTGAGCTTCTTCAACGCGAATGCCGGATCAAGCATCCGTTAAGAGTTGTCCCGTTGTTCGAGAAGCTTGCAGATCTCGAGGCTGCTCCGGCCGCCTTGGCTCGCTTGTTTTCGGTAGAATGGTATAGAAACAGGATCAATGGGAAACAAGAAGTCATGATTGGGTACTCCGATTCCGGAAAAGATGCCGGAAGATTCTCTGCAGCATGGCAGCTGTATAAGGCTCAAGAGGATCTTATAAAGGTAGCCAAGAAGTATGGGGTCAAGCTAACAATGTTCCATGGTCGTGGCGGGACGGTTGGAAGAGGAGGCGGGCCTACTCACCTTGCTATCCTCTCCCAACCTCCGGACACTGTCCATGGATCGCTTCGTGTCACGGTTCAGGGTGAAGTAATTGAGCAGTCATTCGGGGAGCAGCATTTGTGCTTCAGAACACTTCAAAGGTTCACTGCTGCCACCTTAGAGCACGGTATGAACGCCCCAATTGCACCGAAGCCAGAATGGCGTCAGCTTATGGATGAGATGGCCGTCATTGCCACAGAGGAGTACCGATCAATTGTGTTCAAGGAGCCACGATTCGTCGAATACTTTCGCCTAGCTACCCCGGAGTTAGAGTACGGAAGGATGAACATTGGAAGTAGACCGGCGAAGAGAAAGCCTAGTGGAGGCATTGAAACTCTGCGTGCAATTCCTTGGATCTTTGCGTGGACGCAGACAAGGTTTCATCTTCCGGTATGGCTAGGCTTTGGAGCTGCATTTAAAAATGTTATTCAGAAAGATGTTAGAAATCTCAACATGCTACAAGAGATGTACAACAATTGGCCTTTCTTTAGAGTCACCATTGATTTAGTGGAAATGGTGTTCGCGAAGGGCGATCCGGGTATCGCTGCTCTGAATGATAGGCTTTTGGTTTCTAAAGATTTATGGCCCTTTGGGGAGCAGTTGAGGAACAAATATGAAGAAACTAAGAAACTCCTCCTTCAGGTGGCTGGACACAAGGATCTTCTAGAAGGTGACCCCTACTTGAAGCAAAGGCTCCGGCTGCGTGATTCCTACATCACTACCCTGAATGTTTTCCAAGCTTACACATTGAAACGCATCCGCGATCCGAACTACAACGTGAATGTGAGGCCACGCCCGCGCATATCTAAAGAATCATTAGACATCAGCAAATCGGCCGACGAATTAGTCTCGCTGAACCCAACAAGTGAATATGCTCCGGGTTTGGAAGACACCCTCATCCTCACCATGAAGGGTATCGCTGCCGGAATGCAGAACACTGGTTAA	2910	0.4722	MANRNLEKMASIDAQLRQLAPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLRETVQEVYELSAEYEGKHDPKKLEELGKVITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFVDENNATTESDIEETLKKLVLNLKKSPQEVFDALKNQTVDLVLTAHPTQSIRRSLLQKHGRIRNCLSQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWMGVPKFLRRLDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELHGSFKKDEVAKHYIEFWKKIPANEPYRVILGDVRDRLYKTRERSRHLLAQGYSDIPEEASFTNVEEFLEPLELCYRSLCACGDRAIADGTLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLGIGSYQEWSEEKRQEWLLEELSGKRPLFGPDLPTTEEIRDVLDTFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECRIKHPLRVVPLFEKLADLEAAPAALARLFSVEWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDLIKVAKKYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTVHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMNAPIAPKPEWRQLMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKNVIQKDVRNLNMLQEMYNNWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSKDLWPFGEQLRNKYEETKKLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVFQAYTLKRIRDPNYNVNVRPRPRISKESLDISKSADELVSLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*	970

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo07g2351	969	Pfam	Phosphoenolpyruvate carboxylase	35	969	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	969	-	-
	Amo07g2351	969	Coils	Coil	104	124	-	-
	Amo07g2351	969	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	969	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	Gene3D	Phosphoenolpyruvate/pyruvate domain	308	445	-	-
	Amo07g2351	969	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 2.	593	605	IPR033129	-
	Amo07g2351	969	PRINTS	Phosphoenolpyruvate carboxylase signature	167	180	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	PRINTS	Phosphoenolpyruvate carboxylase signature	220	236	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	PRINTS	Phosphoenolpyruvate carboxylase signature	280	295	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	PRINTS	Phosphoenolpyruvate carboxylase signature	442	462	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	PRINTS	Phosphoenolpyruvate carboxylase signature	591	611	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	PRINTS	Phosphoenolpyruvate carboxylase signature	633	662	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	PRINTS	Phosphoenolpyruvate carboxylase signature	765	791	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	33	969	IPR015813	GO:0003824
	Amo07g2351	969	Hamap	Phosphoenolpyruvate carboxylase [ppc].	23	969	IPR022805	GO:0006099\|GO:0008964\|GO:0015977
	Amo07g2351	969	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	168	179	IPR018129	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo07g2351	Amo-Chr7	70280230	70285728	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo18g1738	18	36045536	36051311	Amo07g2351	07	70280230	70285728	hybridization
	Amo07g2351	07	70280230	70285728	Amo13g2331	13	40079176	40097742	PCT
	Amo07g2351	07	70280230	70285728	Amo03g0139	03	2569814	2577674	PCT