Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2320 ATGGGAGGTGGGTTTAGAGTGCTGCACTTGGTTAGACCGTTCCTTTCGTTTCTTCCTGAAGTTCAGACTGCTGACAGGAAAGTGCCATTTAGAGAGAAGGTCATATATACCGTTATCTCTCTTTTCATTTTTCTGGTTTGTAGCCAGCTCCCTCTGTATGGAATCCACTCAACAACAGGTGCGGATCCATTCTATTGGATGCGTGTCATCCTTGCTTCCAACCGTGGAACTGTCATGGAGCTTGGAATTACCCCCATTGTAACTTCTGGGTTGGTAATGCAACTTTTGGCTGGGTCGAAGATCATTGAAGTTGACAACAATGTACGAGAGGACCGTGCTCTGTTGAATGGTGCTCAGAAACTGCTGGGAATCTTGATAGCTGTTGGTGAGGCAGTTGCCTATGTTCTTTCTGGAATGTATGGAAGTGTGGGGCAACTTGGAGTTGGAAATGCCATTCTCATTATCCTCCAGCTCTGTTTTGCCGGCATAATTGTGATATGTCTAGATGAGCTACTTCAAAAAGGATATGGTCTGGGGTCTGGAATTTCCCTATTCATAGCAACCAATATCTGTGAAAATATCATATGGAAGGCATTTAGTCCCACCACCATTAACAGTGGACGTGGAGCTGAATTTGAGGGAGCTGTTATTGCTCTGTTCCACTTGTTGATAACTAGAACGGACAAAGTCCGAGCTCTTCGGGAGGCATTTTACCGGCAGAATCTTCCCAACGTGACAAATCTGCTTGCCACTGTCTTGATCTTCCTGATTGTGATATACTTCCAAGGTTTCCGAGTGGTATTGCCTGTAAGGTCAAAGAATGCCCGTGGACAGCAGGGTTCATACCCTATCAAACTGTTTTATACCTCCAACATGCCCATTATTCTTCAGTCTGCCCTTGTTTCCAATCTGTACTTCATCTCCCAGCTGCTTCACCGCAAGTACAGTGGAAACTTCTTTGTCAATCTTTTGGGTAAATGGAAGGAATCTGAATATGGTGGTGGTCAGTCTATTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCTTTGTTCTATCTTGTCTTTATGCTGTCAGCTTGTGCCTTGTTTTCCAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGAGCAACAAATGGTGATGCCTGGACATCGTGAGTCGAATCTGCAGAAGGAGCTGAACCGTTACATTCCAACTGCTGCAGCTTTCGGAGGCATGTGTATTGGTGCCCTAACAGTGTTGGCAGATTTCATGGGAGCAATTGGTTCCGGTACGGGAATATTGCTTGCAGTAACAATCATCTATCAATACTTCGAGACATTTGAGAAGGAAAGAGCCAGCGAGCTTGGCTTCTTCGGTTTCTAA 1431 0.4514 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVNLLGKWKESEYGGGQSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2320 476 SUPERFAMILY Preprotein translocase SecY subunit 10 466 IPR023201 -
Amo07g2320 476 Pfam SecY 77 459 IPR002208 GO:0015031|GO:0016020
Amo07g2320 476 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 31 467 IPR002208 GO:0015031|GO:0016020
Amo07g2320 476 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Amo07g2320 476 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 1 476 IPR002208 GO:0015031|GO:0016020
Amo07g2320 476 PIRSF SecY_Sec61alpha 8 471 IPR002208 GO:0015031|GO:0016020
Amo07g2320 476 Gene3D SecY subunit domain 9 474 IPR023201 -
Amo07g2320 476 PANTHER F9K20.24 PROTEIN 1 476 - -
Amo07g2320 476 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2320 Amo-Chr7 69402078 69405972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2320 1 476 Miscellaneous Gene Families AT2G34250 93.908 0.0 912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo07g2320 07 69402078 69405972 Amo03g0184 03 3611025 3632707 PCT