Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0168 ATGGCCATGGATCCCACCAAGAAACGCAAGCTAGACGAGAACGGTTTTTCTGCCGCCCCCGCCGCACCAACCGATGGCGACAATCACCTCATGCTCACCCCTACGGACGCCCGCAAGATCATGGAGCGCTTCACCCCTGACCAACTCCTCGACATCCTCCAGGACGCCGCCGTCCGCCATGCGGACGTCCTGGCCGCCGTGCGCTCCGTCGCTGACCCCGATGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTAGGCTGGGACACCACCACCGACGGCCTCCGCAACCTATTCTCCACTTACGGCGACCTCGAGGAGGCGGTCGTTATCCTCGACAAAGCCACTGGCAAGTCCAAGGGCTATGGCTTCGTCACCTTCCGACACGTCGATGGTGCACTCCTCGCTCTGCGCGAGCCTAGCAAGCGAATCGATGGCCGTGTAACCGTCACGCAGCTTGCCGCAGCAGGCAATTCAGGCGCCACCACTAACGCTGCTGACGTGGCACTGCGAAAGATCTATGTCGCGAACGTGCCGCCGGACCTCCCCGCGGACAAGCTGCTGGCGCACTTCTCGCACTACGGGGAGATCGAGGAAGGGCCGCTGGGGTTCGACAAGCAGACCGGAAAATCAAAGGGTTTTGCGCTTTTCGTGTATAAGACTCCTGAGGGGGCTCAAGCTGCTTTGATGGAGCCCGTGAAGACGGTGGATGGGAGGCAGCTAAATTGCAAGCTGGCAATTACGGATGGGAAGCAAGGAAAGCGAGGCGGGGCGGCGCCAGGAGGGGCTGATGGCGTTCAGGGTCATGGTCATGGCCACGGTCACGGGAATGCTCATGGTCACGGGGATGGGATGGGGATGGCTCCGGCTTCTGTGCCAGGAACGCTTTCGGGTCAATATGGCGGCCCAGTTGGCAATTTGGGTTCTTATGGAGGGTTTGCTGGTGGGCTTCAGGGTCAGCCTCCCATGGGGAGTCATCCGTTGAATTCTTCAGTTGGTGGGCTGGGCTCTGTTGGAAATCAGGCTCCCCCAGCGATGGGCGGGGCTGGAGGGTATGGGTCTGGTCTTGGAGGCCATTATGGTGGTTATGGTGTGCCTGGATCTGTAGGCTTCGGTGGAATGGGAGGTGGGGCTGCAGGTGGTGGTGCTGGTTTAGGAGGAGGCGGCGCAGGTGGTGCTGGCGCTGGTGGACTTGGTGCTGCTTTGGGTGGCGCTGCTTCAATGTATAGATTGCCGGGTTCAGGCGGAATGCCAGGTGCTGGGTATCCTGAGAGTGGACATTACAGTTTATCAGCTTCGTCCGGTTACCAGAATCAGCATCACCCGCCTGCTGGAGCCTCTCCTGTTCCTAGGGTTCCTCCTGGTTCTATGTATCCAAATGTTCCCCCTTACTACTGA 1395 0.6007 MAMDPTKKRKLDENGFSAAPAAPTDGDNHLMLTPTDARKIMERFTPDQLLDILQDAAVRHADVLAAVRSVADPDVSQRKLFIRGLGWDTTTDGLRNLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGATTNAADVALRKIYVANVPPDLPADKLLAHFSHYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALMEPVKTVDGRQLNCKLAITDGKQGKRGGAAPGGADGVQGHGHGHGHGNAHGHGDGMGMAPASVPGTLSGQYGGPVGNLGSYGGFAGGLQGQPPMGSHPLNSSVGGLGSVGNQAPPAMGGAGGYGSGLGGHYGGYGVPGSVGFGGMGGGAAGGGAGLGGGGAGGAGAGGLGAALGGAASMYRLPGSGGMPGAGYPESGHYSLSASSGYQNQHHPPAGASPVPRVPPGSMYPNVPPYY* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0168 464 SMART rrm1_1 79 151 IPR000504 GO:0003723
Amo03g0168 464 SMART rrm1_1 171 243 IPR000504 GO:0003723
Amo03g0168 464 MobiDBLite consensus disorder prediction 1 30 - -
Amo03g0168 464 Gene3D - 163 285 IPR012677 -
Amo03g0168 464 SUPERFAMILY RNA-binding domain, RBD 70 154 IPR035979 GO:0003676
Amo03g0168 464 CDD RRM_RBM24_RBM38_like 170 245 - -
Amo03g0168 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 240 IPR000504 GO:0003723
Amo03g0168 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Amo03g0168 464 MobiDBLite consensus disorder prediction 427 454 - -
Amo03g0168 464 SUPERFAMILY RNA-binding domain, RBD 163 277 IPR035979 GO:0003676
Amo03g0168 464 Gene3D - 54 162 IPR012677 -
Amo03g0168 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 251 IPR000504 GO:0003723
Amo03g0168 464 MobiDBLite consensus disorder prediction 249 298 - -
Amo03g0168 464 CDD RRM_RBM24_RBM38_like 78 153 - -
Amo03g0168 464 PANTHER UBP1-ASSOCIATED PROTEIN 2C 3 430 - -
Amo03g0168 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Amo03g0168 464 PANTHER GEO13361P1-RELATED 3 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0168 Amo-Chr3 3033812 3040760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0168 166 259 C2H2 Transcription Factor Family AT2G19380 38.947 5.77e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2310 13 39810392 39817292 Amo03g0168 03 3033812 3040760 hybridization