Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0143 ATGGCCAACAGTAACCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCACCGGGAATTAGTGCTTCCCCTTCGGAAGATAATATGCGATATTTCAATGTCATGATCCTCGGGCCGACCCAGTCACCGTACGAAGGTAGCAATGAGCTCACTCATTTTCCTTTGTTTCGTATTTTCGGTAGTACATGGCGAGTTGCTTCCCTCTGTAGAGAGTTGCGGGTAGGTGGAGTCTTCAAATTAGAGCTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCGAAGGTTAGGTTTCTGACGAAAATATATCACCCAAACATTGACAAGCTTGGCAGGATATGTCTTGATATTCTTAAAGATAAGTGGAGTCCTGCCCTTCAGATACGCACCGTTCTTTTGAGTATTCAGGCTCTTTTGAGTGCACCAAACCCGGACGATCCACTTTCTGAGAATATTGCAAAGCACTGGAAATCAAATGAGGCCGAGGCTGTTGAAACAGCAAAGGAATGGACTCGATTATATGCAAGCGGTGCCTGA 549 0.459 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGSNELTHFPLFRIFGSTWRVASLCRELRVGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0143 182 Pfam Ubiquitin-conjugating enzyme 80 174 IPR000608 -
Amo03g0143 182 Gene3D Ubiquitin Conjugating Enzyme 1 181 IPR016135 -
Amo03g0143 182 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 180 IPR000608 -
Amo03g0143 182 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 107 122 IPR023313 -
Amo03g0143 182 CDD UBCc 7 175 IPR000608 -
Amo03g0143 182 SUPERFAMILY UBC-like 7 180 IPR016135 -
Amo03g0143 182 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 80 179 - -
Amo03g0143 182 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 51 - -
Amo03g0143 182 SMART ubc_7 8 180 - -
Amo03g0143 182 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 80 179 - -
Amo03g0143 182 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0143 Amo-Chr3 2640930 2644827 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2425 13 42632842 42633454 Amo03g0143 03 2640930 2644827 hybridization
Amo07g2362 07 70413998 70417514 Amo03g0143 03 2640930 2644827 PCT
Amo03g0143 03 2640930 2644827 Amo07g2362 07 70413998 70417514 PCT