Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0139 ATGGCAAAGAAGTTGGAAAAGATGGCATCCATTGATGCCCAACTTAGGCAGCTGGTTCCGGCAAAAGTGAGCGAAGATGACAAACTGATTGAGTATGATGCTCTGCTATTGGATCGCTTCCTTGATATTCTTCAGGACTTACACGGAGAGGATCTGAAAGAAACGGTTCAAGAAGTATACGAGCTTTCTGCTGAATATGAAGGGAAACACGACTCTAAGAAACTGGACGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGTGATTCAATTGTCGTCGCCAAATCCTTTTCTCATATGCTTAACTTGGCCAACTTAGCAGAAGAGGTCCAGATTGCTCATCGGCGAAGGATCAAGTTGAAAAAGGGAGATTTTGCTGATGAGAACAATGCAACTACTGAATCAGACATTGAAGAAACACTCAAGAAGCTTGTAGTGGAATTAAAAAAGTCTCCTCAGGAAGTTTTTGAAGCACTGAAAAACCAGACCGTTGATTTGGTTCTTACAGCTCACCCTACTCAATCTGTTCGTAGATCTTTGCTTCAGAAGCATGGAAGGATACGAAACTGTTTAACTCAATTATATGCCAAAGATGTAACTCCTGATGACAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGATCCAAGCTGCCTTCCGTACTGATGAGATTAGGAGGACTCCTCCAACCCCGCAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAGACAATTTGGACTGGTGTACCCAAATTTCTACGTCGGCTCGATACAGCTTTGAAGAATATAGGGATAAATGAACGTGTCCCTTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGTGGTGATCGTGATGGCAATCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGTTTATTGGCTAGAATGATGGCTGCTAATTTATATTATTCCCAGATAGAGGATCTTATGTTTGAACTGTCAATGTGGCGTTGCAATGATGAGCTGCGTGTACGTGCAGATGAACTTAACAGGTCTTCCAGAAAAGATGCAGTTGCAAAGCACTATATAGAGTTTTGGAAAATCATTCCCCCAAATGAACCATACCGTGTGTTACTGGGCGAAGTAAGGGATAGGCTTTATCAGACTCGTGAGCGATCTCGCCATTTGCTAGCACACGGGCACTCTGAAATTCCAGAGGAAGAAACTTTTACCAATGTTGAGGAGTTCTTGGAACCCCTGGAACTTTGCTATAGATCACTCTGTGCTTGTGGTGATCGGGCAATTGCCGATGGAAGCCTTCTAGATTTCCTTCGGCAAGTCTCTACTTTTGGATTGTCACTAGTGAGGCTTGATATCAGGCAAGAGTCAGACCGTCATACTGATGTGTTGGATGCCATTACCAAGCATCTGGAAATTGGTTCCTACCAGGAATGGTCAGAAGAGAAACGGCAGCAATGGCTTTTGTCTGAATTAAGTGGCAAACGGCCACTGTTTGGGCGCGACCTTCCCAAAACTGAAGAAATTAAAGATGTTTTGGACACATTTCATGTTATTGCTGAACTGCCAGCAGATAACTTTGGAGCATATATCATATCAATGGCAACTGCACCATCTGATGTGCTTGCAGTTGAACTTCTGCAACGTGAATGCCATGTCAAGCATCCACTAAGAGTTGTCCCATTGTTTGAGAAACTTGCAGATCTGGAGGCAGCTCCTGCTGCTTTGGCTCGGTTGTTCTCCGTAGAATGGTACAGAAACCGAATCAACGGAAAGCAAGAAGTTATGATTGGTTATTCTGATTCAGGTAAAGATGCTGGAAGGTTCTCTGCAGCATGGCAGCTATATAAGGCCCAAGAGGAACTTATCAAGGTAGCTAAAGAGTATGGTGTTAAGCTAACAATGTTCCATGGTCGCGGTGGAACTGTTGGGAGAGGAGGTGGTCCAACCCACCTTGCTATCTTATCCCAACCTCCGGATACAATCCATGGGTCACTTCGTGTAACTGTCCAAGGTGAAGTTATTGAACAATCATTTGGAGAGCAGCACTTATGTTTCCGAACACTTCAACGTTACACTGCTGCAACTCTAGAACACGGAATGCATCCTCCAATCTCACCCAAACCAGAGTGGCGGGCTTTGATGGATCAGATGGCTGTCATTGCTACAGAGGAATACCGCTCTATTGTATTCAAAGAACCTCGATTTGTTGAGTACTTCCGTCTGGCTACTCCAGAGTTGGAGTATGGCCGCATGAACATAGGAAGTCGACCAGCAAAGCGAAAACCAAGTGGAGGCATTGAGACTCTCCGTGCAATACCTTGGATATTTGCCTGGACACAAACAAGGTTTCATCTTCCGGTGTGGCTAGGCTTCGGGGAAGCATTTAGACATGTTATTGGGAAGGATATTAAGAATCTTCATATGCTGCAAGAAATGTACAATCAATGGCCTTTCTTCAGGGTCACTCTTGATTTAGTGGAAATGGTGTTTGCCAAGGGAGACCCTGGCATAGCTGCCCTGTATGATAAGCTCCTTGTTTCACAAGATCTATGGTCGTTTGGGGAGCAGTTGAGGACCAAGTTTGACGAAACCAAGAAACTCCTGCTTCAGGTGTGTGGACACAGAGATCTTCTTGAAGGGGATCCATACTTAAAACAAAGGCTCCGCTTGCGTGATTCTTACATTACCACCCTTAACGTTTGCCAAGCTTATACATTGAAACGTATCCGTGATCCGAACTATAACGTGAGTTTGCGACCGCACATCTCAAAAGAGTATATAGAGATAAGTAAACCTGCTGATGAACTTATAACACTGAACCCAACAAGTGAATATGCTCCTGGTTTGGAAGACACCCTCATCCTCACCATGAAGGGTATTGCTGCTGGCATGCAGAACACTGGTTAA 2901 0.4426 MAKKLEKMASIDAQLRQLVPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDSKKLDELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRIKLKKGDFADENNATTESDIEETLKKLVVELKKSPQEVFEALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDVTPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWTGVPKFLRRLDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELNRSSRKDAVAKHYIEFWKIIPPNEPYRVLLGEVRDRLYQTRERSRHLLAHGHSEIPEEETFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGRDLPKTEEIKDVLDTFHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVEWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRYTAATLEHGMHPPISPKPEWRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRKPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGEAFRHVIGKDIKNLHMLQEMYNQWPFFRVTLDLVEMVFAKGDPGIAALYDKLLVSQDLWSFGEQLRTKFDETKKLLLQVCGHRDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVSLRPHISKEYIEISKPADELITLNPTSEYAPGLEDTLILTMKGIAAGMQNTG* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0139 966 Pfam Phosphoenolpyruvate carboxylase 34 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 Hamap Phosphoenolpyruvate carboxylase [ppc]. 22 966 IPR022805 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 966 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 966 - -
Amo03g0139 966 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 32 966 IPR015813 GO:0003824
Amo03g0139 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 167 178 IPR018129 -
Amo03g0139 966 Gene3D Phosphoenolpyruvate/pyruvate domain 307 444 - -
Amo03g0139 966 PRINTS Phosphoenolpyruvate carboxylase signature 166 179 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 PRINTS Phosphoenolpyruvate carboxylase signature 219 235 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 PRINTS Phosphoenolpyruvate carboxylase signature 279 294 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 PRINTS Phosphoenolpyruvate carboxylase signature 441 461 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 PRINTS Phosphoenolpyruvate carboxylase signature 590 610 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 PRINTS Phosphoenolpyruvate carboxylase signature 632 661 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 PRINTS Phosphoenolpyruvate carboxylase signature 764 790 IPR021135 GO:0006099|GO:0008964|GO:0015977
Amo03g0139 966 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 592 604 IPR033129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0139 Amo-Chr3 2569814 2577674 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2331 13 40079176 40097742 Amo03g0139 03 2569814 2577674 hybridization
Amo18g1738 18 36045536 36051311 Amo03g0139 03 2569814 2577674 PCT
Amo07g2351 07 70280230 70285728 Amo03g0139 03 2569814 2577674 PCT
Amo03g0139 03 2569814 2577674 Amo08g1352 08 21991252 21996179 PCT