Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0030 ATGTCTTATGAGGGATTGAATGCATTGGGCCAGCAGATTGGCCATGTAAGCACTGGTTTATCAGAGAAAATAATAACCAATCAAATGATGACAAAAACATATTTAATGGCTGCTAGTGCTGTTAATTTGGAGGAGGCAACTTCTCATGAGGTGGAAGCTGATGTTTGTATAATATGCCAGGATGAATACAAGAACCAAGATATGATTGGAGTTCTTCAATGTGAGCATGAATATCATGCTGATTGTTTAAGGAAATGGTTGGTTGTGAGGAATGTCTGCCCCTTGTGCAAATCAGAAGCATTCATTCTAGGGGTGTAA 318 0.3899 MSYEGLNALGQQIGHVSTGLSEKIITNQMMTKTYLMAASAVNLEEATSHEVEADVCIICQDEYKNQDMIGVLQCEHEYHADCLRKWLVVRNVCPLCKSEAFILGV* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0030 105 SMART ring_2 56 96 IPR001841 -
Amo03g0030 105 SUPERFAMILY RING/U-box 55 101 - -
Amo03g0030 105 Pfam Ring finger domain 55 97 IPR001841 -
Amo03g0030 105 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 102 IPR045191 GO:0061630
Amo03g0030 105 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
Amo03g0030 105 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 102 - -
Amo03g0030 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 101 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0030 Amo-Chr3 705619 707409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0030 1 101 C3H Transcription Factor Family AT2G15530 44.118 8.00e-27 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1677 18 33937822 33941597 Amo03g0030 03 705619 707409 PCT
Amo07g2397 07 71015868 71019645 Amo03g0030 03 705619 707409 PCT
Amo03g0030 03 705619 707409 Amo18g1677 18 33937822 33941597 PCT
Amo03g0030 03 705619 707409 Amo07g2397 07 71015868 71019645 PCT