Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00422 ATGGCTCCCAGGGATAAGACGGCTGCCGTTAAGGTTAACGGCAAAGGTAGCGCCGGCGTCAAAGAGGTACATTTTAGGGGTGTTAGGAAGAGGCCATGGGGAAGGTACGCTGCTGAGATCAGAGATCCAGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACCGCCGAGGACGCAGCGCGTGCATACGACGCCGCCGCCCGAGAGTTCCGTGGCCCAAAGGCTAAGACCAACTTCCCCTTTCCTGATTCCGACGACAACAACAATAACAACATCGTCGTCGTTAAGAACAACAACCGCAGCCCCAGCCAGAGCAGCACCGTCGAATCTTCCAGCCGGGACCGCGACTCCTACTCTGCCGCTGCCACCGCAGCAGCTGATTCGTCGCCCTTAGACCTTAACTTGGCCCCCGCTGGAGCTGGATTCTCCGGATCCATTCGGTTCCCATTCCAGCAGCCGTTCGCTGTGTTTCCCTGCCGGATGCCGGCGGCGAAGCAGGCTCTGTACCTCGACGCGGTGCTGCGCGCCGGCATGGTTGGTCACGGCCAGTTCGGTTTTGGTTATAACCGTCCCGCGGCGGCGGGAGCGCAGAGTGACTCGGACTCTTCGTCGGTAATTGATCTGAACCAGCACGACCGCGATGTCGCTAAGAATAACGGAAGAGGCTTAGTTCTAGACCTGAACGAACCTCCTCCACAAGAGATGGCTTGA 714 0.591 MAPRDKTAAVKVNGKGSAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDAAAREFRGPKAKTNFPFPDSDDNNNNNIVVVKNNNRSPSQSSTVESSSRDRDSYSAAATAAADSSPLDLNLAPAGAGFSGSIRFPFQQPFAVFPCRMPAAKQALYLDAVLRAGMVGHGQFGFGYNRPAAAGAQSDSDSSSVIDLNQHDRDVAKNNGRGLVLDLNEPPPQEMA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00422 237 MobiDBLite consensus disorder prediction 75 120 - -
Aip10g00422 237 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Aip10g00422 237 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Aip10g00422 237 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Aip10g00422 237 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 218 - -
Aip10g00422 237 MobiDBLite consensus disorder prediction 82 120 - -
Aip10g00422 237 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Aip10g00422 237 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Aip10g00422 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 218 - -
Aip10g00422 237 MobiDBLite consensus disorder prediction 197 237 - -
Aip10g00422 237 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Aip10g00422 237 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Aip10g00422 237 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00422 Aip-Chr10 4162070 4163145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00422 1 91 AP2-EREBP Transcription Factor Family AT5G44210 67.677 1.44e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip10g00422 AP2 7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00422 10 4162070 4163145 Aip10g00422 10 4162070 4163145 ECH
Aip03g02141 03 31776075 31776871 Aip10g00422 10 4162070 4163145 ECH
Aip08g00947 08 10934729 10935382 Aip10g00422 10 4162070 4163145 ECH
Aip03g01792 03 22275582 22276892 Aip10g00422 10 4162070 4163145 ECH