Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01513 ATGGATAAGATGATAGCTTCAGAGATGGACCAACATAGACAAGGTTATTTTCATTCAGAACCCGGTATCCTTCCAAGAGGCACTGGCATCTCGCATCCTAATATCCGTACAATTGTGGCAGCTTCCGGGAGCACAAGTAATCATGATTCCCACTATTTACCACCAGATGCATATGACAATGGCGTATATGTGACACAGTATAACGGGGTTCAACCGCAACATAATCGTAACATGGCCGTTGCAGCCACGCCGAATTTATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGTGTATTCCCTATGCCTCTAAATCATAGAGGCTCTGATCAATTGCCTGGTTCGGGCCCGTATGCAGTGTCTTTAGTTTCTTCGGATAATTTTGGAAGAAGCAGCAGCTTCATGGATGATGTCAGAGGTCCTTACAAGAGGAAAAGTGCTGAAGGCATGAGAGGAAATTATCAGTATTTTAATGCTCCGGCTAGTTCCTCAACTGCTCCCCCTAATGCTAGGCATGCCGACGGGGTTCCGGTAATGGATACTGCGTCTTTTCCTCTGCGCGTCCCTTCATTTGTGGAAGTAGGACCACATGGTAATGCATGGAGCAGATCAGGTGATTCCATTATGGTGCACGATCATAACCATTTGATTCGAGGAAACTATGTAGGGCAGCACTTTCAGCCGGCAGCACCTCCGTGGTTGGACCAGCAGTTGAATAGTAATAACAACGATGGTCATACAACAGCATGGAATCAGTCTCTTCCAATGCCTTATATGCATGCTCCAAATGTTAATGGAGGTTCAATAGAGAGTGCAAGTATGGGTTTGCCAAGGTATCACGAAACGGCGAGCAACAGAAACGGCCTTAGATTTCCTCATCCTCCTCCGGTCAATCACCAGCACCATAATTATCATCATCCGGCACTGCCTATGCAAGGAGTAAGAGGTCACGGTGTTAACTTCCACCCTCCTGTAACTGCGGCTTCATTCAGAGTTCCAACGAATCCTTCACACAGTGCTGCAATGCCCACGCCTAATGGTTTCGAGATGGGCCCCAGGCATGTGGGCCCTGTGCCATCAGGAGGCCTACGCATCTACCGACCTCATAGGGGAGTCATGCATGAAACTATTGGTCACCGAAATATTCCCCCCATGGGTTTCCTTCATGTTGATGATGTTGCTCTAATCGATGAGGTGGGAAATTTGGTTGACCATCACCGAGACATGCGCATGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATCGGCAACGTAAGCACTGGTTTATCAGAGGAAACAATTGCGGCCCAATTGAAAACAAAATCATATTTCAAACCGATTTCTGCTACTAATTCAGATGAGGCAGCCTTGGACGACTGCGAAGCTGATTCTTGCATTATATGCCAGGATGAATACAAGAACAAAGAGAAGATCGGAGTTCTGCGATGCGAGCACGAGTACCATGCGGATTGCTTGAGGAAGTGGTTGATTGTGAAGAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGGGAAGGATGTATAG 1572 0.4682 MDKMIASEMDQHRQGYFHSEPGILPRGTGISHPNIRTIVAASGSTSNHDSHYLPPDAYDNGVYVTQYNGVQPQHNRNMAVAATPNLYYSGMNPSSSTGVFPMPLNHRGSDQLPGSGPYAVSLVSSDNFGRSSSFMDDVRGPYKRKSAEGMRGNYQYFNAPASSSTAPPNARHADGVPVMDTASFPLRVPSFVEVGPHGNAWSRSGDSIMVHDHNHLIRGNYVGQHFQPAAPPWLDQQLNSNNNDGHTTAWNQSLPMPYMHAPNVNGGSIESASMGLPRYHETASNRNGLRFPHPPPVNHQHHNYHHPALPMQGVRGHGVNFHPPVTAASFRVPTNPSHSAAMPTPNGFEMGPRHVGPVPSGGLRIYRPHRGVMHETIGHRNIPPMGFLHVDDVALIDEVGNLVDHHRDMRMDIEDMSYEDLLALGERIGNVSTGLSEETIAAQLKTKSYFKPISATNSDEAALDDCEADSCIICQDEYKNKEKIGVLRCEHEYHADCLRKWLIVKNVCPICKSEALTPGGKDV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01513 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Aip08g01513 523 Pfam Ring finger domain 469 512 IPR001841 -
Aip08g01513 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 516 IPR013083 -
Aip08g01513 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 520 IPR045191 GO:0061630
Aip08g01513 523 SMART ring_2 471 511 IPR001841 -
Aip08g01513 523 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 520 - -
Aip08g01513 523 SUPERFAMILY RING/U-box 470 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01513 Aip-Chr8 25911110 25914810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01513 388 516 C3H Transcription Factor Family AT2G15530 47.015 1.56e-34 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01513 08 25911110 25914810 Aip08g01513 08 25911110 25914810 ECH
Aip08g01513 08 25911110 25914810 Aip03g02152 03 32124440 32125290 PCT