Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00947 ATGCGAAACCCATTATCGTCGATGACTATCAAGAAAAAGCATCCCGCTAGCAAGAAGGAGCCAAACAATAATATTGCCAAGGAGGTTCATTACAGGGGTGTAAGGAAGAGGCCATGGGGTCGTTATGCCGCCGAGATCCGCGATCCTGGAAAGAAGAGTCGCGTCTGGCTCGGAACATTCGACACAGCTGAGGAAGCCGCCATGGCCTACGACGCCGCCGCCAGGCAGTTCCGCGGCGCCAAGGCCAAGACCAATTTCCCTTGCGCTTCCCACCACGAAAACGACGACATCTTCGCCGTCGCCGGCAGAAAATGCGGCATCGTTGAGTCTTATCCGATTGATTCTGCGTCTGAGCGTGACGTGACACGGTGGACAGAAGTAGATCGGTTTTTTCCGTTTGTTCCATACTGTGGCGGTGAGGGCGTAGTTGCACCGGTGGGTCCGGTTTTTTTGCCTGAACCGGTTGGTAGAGTTGAGTTCGTTGGCAAGCAGAGTTGTTGTCCTTTTCGGTTCGAGCCGGTAAGGATGGATGGGTTTAGTGCACGATCTGGAAGTGGGGCCCAGAGTAACTCGGATTCAACATTAGCCGTCGATTGCAAACCAAATGGAGTTCTTAATCTTGATCTGAACCTCGCTCTACCCATTGGCCATTGA 654 0.5306 MRNPLSSMTIKKKHPASKKEPNNNIAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAMAYDAAARQFRGAKAKTNFPCASHHENDDIFAVAGRKCGIVESYPIDSASERDVTRWTEVDRFFPFVPYCGGEGVVAPVGPVFLPEPVGRVEFVGKQSCCPFRFEPVRMDGFSARSGSGAQSNSDSTLAVDCKPNGVLNLDLNLALPIGH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00947 217 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Aip08g00947 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 117 - -
Aip08g00947 217 MobiDBLite consensus disorder prediction 1 25 - -
Aip08g00947 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 117 - -
Aip08g00947 217 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Aip08g00947 217 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Aip08g00947 217 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Aip08g00947 217 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Aip08g00947 217 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Aip08g00947 217 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Aip08g00947 217 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00947 Aip-Chr8 10934729 10935382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00947 23 215 AP2-EREBP Transcription Factor Family AT5G44210 46.766 1.76e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip08g00947 AP2 3.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00947 08 10934729 10935382 Aip03g02141 03 31776075 31776871 ECH
Aip08g00947 08 10934729 10935382 Aip08g00947 08 10934729 10935382 ECH
Aip08g00947 08 10934729 10935382 Aip10g00422 10 4162070 4163145 ECH