Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04396 ATGGGGCTTGGGTTGAAGATGAAGATTCAGGAGATGCAGATGGTGATGCAGAAGCACCATGTCCCTGTGGCTTTGAGGATGCATGAGCAAAATGGGAGCCAAAAGAGAAAGTACACTTTAATTCAAAAAAACAGGGCTTTGATTCCACTGTTTCTGCTTCTGTGGACCCTTGTGATGGCTTACTTTTGTTGGTTTATCTTCAACAAAATGGATGCTGATGCCAAGGTGAGGAGGAAGGAGGGTCTAGAAAGCCAGTGTGACCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTTCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGACACCCCTCTGCCATTGACCAGGAAACCTTTGCAGAATATACAGCTAGGACAGCATTTGAAAGGCCATTGTTGAGTGGGGTGGCTTATGCTCAAAGAGTGGTACATTCTGAGAGGGAAAGATTTGAGAAGCAACATGGATGGATTATAAAGACAATGGAGAGAGAGCCCTCACAGCTCAGAGACGAGTATGCACCGGTGATCTTTGCCCAGGAAACCCTTTCCTACCTTGAATCTCTTGATATGATGTCCGGGAAGGAGGATAGAGAGAATATTTTAAGGGCCAGGGCCACTGGAAAAGCCGTTCTGACAAGCCCCTTTAGGCTTTTAGGGTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTTCCTCCAAATCCAACATTGGAAGAACGCATTAAAGCAACAGCAGGATATGTCGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTCGGTCAGCTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATGTTACAAACTCTTCTACCCACCTGATCATGTATGGGAGCCAAAATGAAAAAGGTGACATGTCACTTGTCCATGAAAGTAACCTTGATTTTGGAGATCCTTACAGGAATCATACGATGATATGTAGGTATCATCAGAAGGCACCAACTAATTGGATGGCACTTACCACAGTATTCCTATCCTTTGTGATCCTCTTATTAATTGGTTACATTTTGTATGGTGCTGGAATTCATATTGTCAAAGTAGAGGATGATTACCAGGAAATGGAGGAGTTGAAAGTGCTCGCGGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTGTCCCATGAAATTAGAACTCCCATGAATGGAATTTTAGGAATGCTTGGTCTGCTTTTAGATACAGAGTTGACTTCAACCCAGCGAGATTATGCTCAGACAGCTCAAGCATGTGGAAAGGCACTGATAACACTAATAAATGAGGTGCTTGATCGTGCTAAAATTGAGGCTGGCAAGTTAGAGCTTGAAGCTGTTCCATTTGACATCCGTTCCATTCTTGATGACGTCCTCTCACTTTTTTCTGAGAAGTCTAGGCATAAAGGTTTAGAGTTGGCAGTGTTTGTTTCTGATAAAGTTCCAGACATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCGGTTAAATTCACTGAACGAGGACATATATTTGTCAAAGTTCATCTAGCAGAAAGTAGAAAGCCCACAATGAATGGAACATGTGAGACTTATCAAAATGGAGAAACAGATGAAGTTGGGCATATATCCGGGGGTTGTAATTCAAAAACTCTGAGTGGGTGTGAAGCTGCTGATGAACGGAACAACTGGGATAATTTCAAGCATCTAATTGCTGATGAGGAATTTTTGTTTGATGGTTTGGTGAAGAAGGTGGCCTCAAGTGAATGCTATGAGCAAGTTACTTTAATGGTGTGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCGGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGATAGCTCGACGTCACGACACTATGGTGGTACCGGGATTGGCTTGAGTATTAGTAAGTGTCTGGTGGAACTAATGGGTGGTCAGATAAACTTCATAAGCCGACCCCAAGTTGGGAGTACATTTTCATTTACTGCAAACTTTGGGACGTTCAATAAAAATTCAAAAACAGATGTGAAGAAGCTGAACGTGGAAGATCTTCCTTCTAGTTTTAGAGGGCTTAAAGCTATAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTCACAAGATACCATTTGACGAGACTTGGTATTCAAGCTAAAGTTGCAAACCACATTAAAAAGGTTGTTTTGTTATGTGGGAAGAATGGTTCTTTAACTTCAGGATTATTTCAGCCTGATATTGTTTTGGTTGAGAAGGATTCATGGTTTTCGGGAGAGGATGGAGTTTTCAATATCTGGCAACTAGATTGGAAAAAGAATGGTCACATGTTGAAGATACCCCAAATGATACTTCTTGCAACCAATATTAGTAATGCCGAATTCGATAGAGCCAAAGCCACAGGTTTCAGCGACACGGTGATCATGAAGCCTCTGAGAGCAAGTATGGTGGCTGCTTGTCTGCAGCAAGTTCTGGGGATGGGAAAGAAGAGGCAGCTTGGGAAAGACATGCCAAATGGCTCAACTTTCCTAAAAAGCCTTCTTTGTGGAAAGAAAATGTTGGTGGTTGATGACAATATTGTAAACAGGAGGGTCGCCGCCGGTGCATTAAAGAAGTTTGGAGCTGATGTGAAGTGTGCTGAAAGTGGCAAAGTTGCTCTTGAGATGCTTCAGTTGCCTCACAATTTTGATGCTTGTTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAGGCAACTCGTCGAATTCGAATGATGGAGAGCAAGGCGAACGAGCAACTGACGAACGGCGATGAGCACCCCCACTTACCGATATTGGCTATGACAGCTGATGTTATCCATGCTACTTATGAAGAGTGCTTGAAGTGCGGGATGGATGGATATGTATCAAAGCCGTTTGAGGAAGAGAATCTCTATCAAGCAGTTGCAAAGTTTTTCAAGTCAAAGCATATCTCAGCAGCCTCATGA 3027 0.4278 MGLGLKMKIQEMQMVMQKHHVPVALRMHEQNGSQKRKYTLIQKNRALIPLFLLLWTLVMAYFCWFIFNKMDADAKVRRKEGLESQCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRHPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSERERFEKQHGWIIKTMEREPSQLRDEYAPVIFAQETLSYLESLDMMSGKEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTLEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDVTNSSTHLIMYGSQNEKGDMSLVHESNLDFGDPYRNHTMICRYHQKAPTNWMALTTVFLSFVILLLIGYILYGAGIHIVKVEDDYQEMEELKVLAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELTSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAESRKPTMNGTCETYQNGETDEVGHISGGCNSKTLSGCEAADERNNWDNFKHLIADEEFLFDGLVKKVASSECYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTANFGTFNKNSKTDVKKLNVEDLPSSFRGLKAIVVDGKPVRAAVTRYHLTRLGIQAKVANHIKKVVLLCGKNGSLTSGLFQPDIVLVEKDSWFSGEDGVFNIWQLDWKKNGHMLKIPQMILLATNISNAEFDRAKATGFSDTVIMKPLRASMVAACLQQVLGMGKKRQLGKDMPNGSTFLKSLLCGKKMLVVDDNIVNRRVAAGALKKFGADVKCAESGKVALEMLQLPHNFDACFMDIQMPEMDGFEATRRIRMMESKANEQLTNGDEHPHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFKSKHISAAS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04396 1008 Pfam Response regulator receiver domain 873 995 IPR001789 GO:0000160
Aip03g04396 1008 SMART CHASE_2 119 304 IPR006189 -
Aip03g04396 1008 SMART HisKA_10 392 457 IPR003661 GO:0000155|GO:0007165
Aip03g04396 1008 Gene3D - 708 848 - -
Aip03g04396 1008 Gene3D - 865 1007 - -
Aip03g04396 1008 SMART REC_2 870 995 IPR001789 GO:0000160
Aip03g04396 1008 Coils Coil 369 389 - -
Aip03g04396 1008 Pfam CHASE domain 122 302 IPR006189 -
Aip03g04396 1008 CDD HATPase_EvgS-ArcB-TorS-like 509 687 - -
Aip03g04396 1008 PANTHER HISTIDINE KINASE 4 33 1003 - -
Aip03g04396 1008 PRINTS Bacterial sensor protein C-terminal signature 614 628 IPR004358 GO:0016310|GO:0016772
Aip03g04396 1008 PRINTS Bacterial sensor protein C-terminal signature 632 642 IPR004358 GO:0016310|GO:0016772
Aip03g04396 1008 PRINTS Bacterial sensor protein C-terminal signature 649 667 IPR004358 GO:0016310|GO:0016772
Aip03g04396 1008 PRINTS Bacterial sensor protein C-terminal signature 673 686 IPR004358 GO:0016310|GO:0016772
Aip03g04396 1008 ProSiteProfiles Response regulatory domain profile. 714 844 IPR001789 GO:0000160
Aip03g04396 1008 Gene3D - 70 122 - -
Aip03g04396 1008 SUPERFAMILY CheY-like 869 999 IPR011006 -
Aip03g04396 1008 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 446 684 IPR036890 -
Aip03g04396 1008 CDD HisKA 392 453 IPR003661 GO:0000155|GO:0007165
Aip03g04396 1008 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 504 686 IPR003594 -
Aip03g04396 1008 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 380 458 IPR036097 GO:0000155|GO:0007165
Aip03g04396 1008 PANTHER TWO-COMPONENT HISTIDINE KINASE 33 1003 - -
Aip03g04396 1008 Gene3D - 456 692 IPR036890 -
Aip03g04396 1008 Gene3D CHASE domain 123 338 IPR042240 -
Aip03g04396 1008 Gene3D - 368 455 - -
Aip03g04396 1008 ProSiteProfiles Histidine kinase domain profile. 399 689 IPR005467 -
Aip03g04396 1008 SUPERFAMILY CheY-like 710 845 IPR011006 -
Aip03g04396 1008 SMART HKATPase_4 504 689 IPR003594 -
Aip03g04396 1008 ProSiteProfiles CHASE domain profile. 119 331 IPR006189 -
Aip03g04396 1008 CDD REC_hyHK_CKI1_RcsC-like 873 995 - -
Aip03g04396 1008 Pfam His Kinase A (phospho-acceptor) domain 392 457 IPR003661 GO:0000155|GO:0007165
Aip03g04396 1008 ProSiteProfiles Response regulatory domain profile. 871 999 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04396 Aip-Chr3 128260656 128266987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04396 35 1008 Histidine Kinase Gene Family AT2G01830 70.163 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g04396 HATPase_c 1.8e-30 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04396 03 128260656 128266987 Aip03g04396 03 128260656 128266987 ECH