LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g04379	ATGGTGGCGAAATCAGGGGAGAATGGCTGTGTGGCTCCGTTCCTTCAGAAGTGCTACGATATGGTCTCCGACCCTTCCACCGACTCCGTCATCTCTTGGACCCATCAAGGCCACACCTTCCTCATCTCCGATATCACCCAATTCTCCCTCACTCTTCTCCCCAATTACTTCAAGCACAACAACTTCTCCAGTTTCATCCGCCAGCTCAACATCTACGGCTTCAGGAAAATTGATACGGACCGCTGGGAATTCGCCAATGACAACTTTGTCAAGGGTCAAAAGCATTTGTTGATCAATATTCGGAGAAGGAAACATCCGCACGCTGCAGATCATCAAAAGCCAGTGGCCATGAAAGACAATTCTGATGAAGCACCAGCAAATGATGGGCTTTGGAAGGAAGTGGAGAATCTAAAATCCAACAAGAATTCCCTCATGCAGGAGTTGGTTAAACTTAGGCAGCATCAAGAATCTGCCGAGAATAAGCTGCTACTCCTCACTGATCGCCTTCAAGGAATGGAGAAGCATCAGCAGCAGATGCTATCATTCTTGGTCATGGTTGTTCAAAGTCCCGGCTTCATGGTTCAACTCCTTCAGCCTAACGAAAACAATTGGCGAATGGCCGAACTTGGAGATGGGAATGGGATGATAGTAAAGTATAAACCTCCGGTGCCCGAAAATCTCAAGCCTGTAGTTCCCCGATCACCCACTTTCGAGAAGCAACCGGAACCTGAGCTTTCTTTCGATGGTTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAAGTTCTTATGGATGAGAAGTTGTCTCCTTTGGAAAATCATCCTCCATTTCTTCTTCCGGATTTACCTGATGATGGTTCATGGGAGCAACTTTTTCTTGGTAGTCCTTTCTTGCAAAACACTGATGAAGCTGACAAGCCCACTGTCAGCGGAATGGAGATAGAACCCATCACACACGAAGATCAAACTGAAAAGTCTCAATCTTTTGAATCTTTGATTCTAGAAATGGAGAAAACTGAAGAGACCGATGCATTGGAATTACGAGCTGATGGAGTTCATTTGGAGGGATCGGATAAACTGAAATCTCTAACCAAGCAAATGGAACTTCTGGCTTCTGAAACTGACAATGAAGAGGAGGAGGAAGAGGAAGGAAGGAAGTGA	1161	0.4548	MVAKSGENGCVAPFLQKCYDMVSDPSTDSVISWTHQGHTFLISDITQFSLTLLPNYFKHNNFSSFIRQLNIYGFRKIDTDRWEFANDNFVKGQKHLLINIRRRKHPHAADHQKPVAMKDNSDEAPANDGLWKEVENLKSNKNSLMQELVKLRQHQESAENKLLLLTDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPNENNWRMAELGDGNGMIVKYKPPVPENLKPVVPRSPTFEKQPEPELSFDGLKDLCISSEFLKVLMDEKLSPLENHPPFLLPDLPDDGSWEQLFLGSPFLQNTDEADKPTVSGMEIEPITHEDQTEKSQSFESLILEMEKTEETDALELRADGVHLEGSDKLKSLTKQMELLASETDNEEEEEEEGRK	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g04379	386	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-8	1	320	-	-
	Aip03g04379	386	MobiDBLite	consensus disorder prediction	348	362	-	-
	Aip03g04379	386	Gene3D	-	7	104	IPR036388	-
	Aip03g04379	386	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aip03g04379	386	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aip03g04379	386	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aip03g04379	386	SUPERFAMILY	"Winged helix" DNA-binding domain	11	103	IPR036390	-
	Aip03g04379	386	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	320	IPR027725	-
	Aip03g04379	386	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aip03g04379	386	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aip03g04379	386	Coils	Coil	134	161	-	-
	Aip03g04379	386	MobiDBLite	consensus disorder prediction	348	386	-	-
	Aip03g04379	386	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aip03g04379	386	Coils	Coil	360	380	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g04379	Aip-Chr3	128180437	128182277	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g04379	11	372	HSF	AT1G67970	44.744	1.09e-93	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Aip03g04379		HSF_DNA-bind	6.2e-30	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g04379	03	128180437	128182277	Aip03g04379	03	128180437	128182277	ECH