Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04370 ATGGCCGCCAACAACAATCCGCATTCTCTCGCTGATCAGAATGCAAATTCTATGCCTCCGCCTATTCTTGATCATCAATTCTCCACTACCACTGCTCCTAGGCTTCTGGTCGTTGATCATGATCCTGAACACTTAAGACTTATTCAAGATATGGCTTTTCAATGCAACTATCAAGTGACCACATGCTTCGAGGGTTCTCATGCTTTGAATCTTCTTCGGGAGAGCAGTGGGTGTTTCGATGTGGTACTATGTGATGTTCATATGCCAGGGATAATGGATGATGGTTCTCGATTACTTGACCATGTTCTCCAAGAATTCAATATTCCTGTCGTAATGATGTGTGCAACAGATGATGAGTCATCAATTGCAGTGATGGAGGGTATGAAAAAGAAAGGGGCTTGTTATAATTTAGTTAAACCTCTTAGCGAGCAAGATTTGATGAACATATGGCAGAATGTGATGGAGAAAACCCAGAAAGAAGTTTTCTATGACGATGATGATGAAAGCAAAGGAACAGTGAATAGAAGGAAGAGGAGCTTATCAACCGAAAGAGATGATCATGATGTTCAGTCCAACACTCCCAACAAAAAGCCACGTTTTATTTGGACCCAAGAAAGGCATCAAATGTTCGTCGATGCTGTACTCCAACTAGGGATTGATAAAGCTGTGCCAAGGAAAATTCTTGAATTGATGGATATCCCTAACTTGACAAGGGAAAATGTTGCAAGCCATCTGCAGAAATATCGGATGCATCTTAAGAAGAAAAGTCAGGAGACTAAGCAAACAAATAGTAATGGGAAGATAAATGTTAATAGAGAAGCTAACAAGCAACTTTGTGCACCATTGAGGGTTCAAGCTTCCACCAACATTCCTCAAATTACACAAACACTACCCGTTCATCACCAATATTATTCTTCTTTATTGTCTGTGCCAAAACAGGATCCCATTATTATGTCATCAAAGTGTGATCATCATTTCCATCATCAGTCTCAACCCATTGTTAGTACTGCACCTCATGCTTTGATGAAATTCTGTAATAGTAACAGTAATCCCTTTGGTCTCATCAACAAGAATGACATTGTTGGAAGTAATATGGCACTCAATCATCAGAATAATAATGATTATGGTTGCTACATTATTCAGCAATCTAATTATAATTATGGGATGATGGCTTCTCAACCCTGTGATGGAGCTGCTTTTCAAGGGGGAATGAGGGGAGGTAGTGGTAGCTGTAGAAATGATTCTCTCGTTGATTACAATGCATTTTCATCATCATCATCATCAGCCTCACTTGCTCTTTATCATCATCAAATGAATAATTCAGTCAGCGGAAGTGGCAGCATTGCTGAGATCCTCAATGATGGCTATATTCCAACCTCATCAGTTGATAATACTAAAATAAAATGA 1407 0.3937 MAANNNPHSLADQNANSMPPPILDHQFSTTTAPRLLVVDHDPEHLRLIQDMAFQCNYQVTTCFEGSHALNLLRESSGCFDVVLCDVHMPGIMDDGSRLLDHVLQEFNIPVVMMCATDDESSIAVMEGMKKKGACYNLVKPLSEQDLMNIWQNVMEKTQKEVFYDDDDESKGTVNRRKRSLSTERDDHDVQSNTPNKKPRFIWTQERHQMFVDAVLQLGIDKAVPRKILELMDIPNLTRENVASHLQKYRMHLKKKSQETKQTNSNGKINVNREANKQLCAPLRVQASTNIPQITQTLPVHHQYYSSLLSVPKQDPIIMSSKCDHHFHHQSQPIVSTAPHALMKFCNSNSNPFGLINKNDIVGSNMALNHQNNNDYGCYIIQQSNYNYGMMASQPCDGAAFQGGMRGGSGSCRNDSLVDYNAFSSSSSSASLALYHHQMNNSVSGSGSIAEILNDGYIPTSSVDNTKIK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04370 468 CDD REC_typeB_ARR-like 36 153 - -
Aip03g04370 468 MobiDBLite consensus disorder prediction 164 197 - -
Aip03g04370 468 Gene3D - 193 255 - -
Aip03g04370 468 Gene3D - 32 169 - -
Aip03g04370 468 SUPERFAMILY Homeodomain-like 195 254 IPR009057 -
Aip03g04370 468 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 30 327 - -
Aip03g04370 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 253 IPR017930 -
Aip03g04370 468 SUPERFAMILY CheY-like 33 157 IPR011006 -
Aip03g04370 468 SMART REC_2 33 150 IPR001789 GO:0000160
Aip03g04370 468 MobiDBLite consensus disorder prediction 164 193 - -
Aip03g04370 468 ProSiteProfiles Response regulatory domain profile. 34 154 IPR001789 GO:0000160
Aip03g04370 468 Pfam Response regulator receiver domain 36 149 IPR001789 GO:0000160
Aip03g04370 468 MobiDBLite consensus disorder prediction 1 22 - -
Aip03g04370 468 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 251 IPR006447 GO:0003677
Aip03g04370 468 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 327 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04370 Aip-Chr3 128101223 128102997 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04370 34 269 Response Regulator Gene Family AT4G31920 41.564 1.56e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g04370 Response_reg 1.7e-13 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04370 03 128101223 128102997 Aip03g04370 03 128101223 128102997 ECH