Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04357 ATGGATCTTTTTGGAAAAAAAAAAATATTGACGCACCTGCGTCCGCTAACATGCGCCGCCTCATCGTCCTACCCTGCGCGACTGGTTCCCCACCCACCGGACCTCATCAAGTGGGTCACCAGAGAAGGCGGCTTCGTCCACCCTGCCATCAAGATAGCGCTTCATCCCTCCCACGGTCTCGGCTTACTCGCCAACCAACAAATCCCCAAGGGTTCCGACCTTATCGTTCTCCCCGACCACATTCCCTTGAGGTTTAACCACCAAGACGTCACCCACTCTCTCCTCCTTCAATTGGCACGCCATGTTCCTGAGGAACTGTGGGCCATGAGGCTAGGTTTGAAGCTGCTTCAAGAAAGAGCTAAAGTTGGATCCTTTTGGTGGCCATACATCAGCAATCTCCCGGAAACATACACTGTCCCTATCTTCTTCCCCGGAGAGGATATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTGAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCATTCCTTAGTCAATCTCACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCATCAAGAGCATTCCGTTTATATGGTGACAAACGGCCAGATGGGATCCATATTGACATACCTATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCCAGAATTGTTCAGGAAAAAGACTCTAGTAGCATAAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTAACTATGGCTGTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACAATCAAACCCGTATGACTGCATTGAACTGAAATACGATGGTGCTCTTTTGGATGCTGCAAGCTCAGCAGCTGGAGTTTCATCACCAAATTTCTCAGCACCTGCTCCATGGCAGGAACAGATTCTTGTTCAGCTAAATCTTGCTGGGGAAGCTTCAGATCTCAAGGTGAGCATAGGTGGTGAAGATGTAGTAGAGGGGCGTTTGTTGGCGGCATTGAGAGTACTCCTTTCAAGTAGTATGGAAACCGTACAGAAGCATGACCTCAACACACTCAAGTCTTTATCAGCCGAAGCCCCGCTGGGTGTTGCAAATGAAACAGATGTCTTGCGTACGCTTATAGCTCTGTGTGTGATTGCACTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAGCAGGGTGCCTCAGGTTCAACGGAATTGGCCATTCAATACAGAATCCAAAAGAAATCTGTGATTGTTGATGCCATGAGATCTCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAAGGAAACAACAGTGAGTGCCGAAGGCTAA 1422 0.4627 MDLFGKKKILTHLRPLTCAASSSYPARLVPHPPDLIKWVTREGGFVHPAIKIALHPSHGLGLLANQQIPKGSDLIVLPDHIPLRFNHQDVTHSLLLQLARHVPEELWAMRLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKHSLVNLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGDKRPDGIHIDIPMMLPLIDMCNHSFNPNARIVQEKDSSSIKMQVKVVAETAIKEDDPLLLNYGCLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASSAAGVSSPNFSAPAPWQEQILVQLNLAGEASDLKVSIGGEDVVEGRLLAALRVLLSSSMETVQKHDLNTLKSLSAEAPLGVANETDVLRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKSVIVDAMRSLSRRVKLLSSKETTVSAEG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04357 473 CDD SET_LSMT 49 291 - -
Aip03g04357 473 Pfam SET domain 59 277 IPR001214 GO:0005515
Aip03g04357 473 Gene3D set domain protein methyltransferase, domain 1 6 290 - -
Aip03g04357 473 PANTHER F21J9.27 7 468 - -
Aip03g04357 473 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 468 - -
Aip03g04357 473 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 287 467 IPR036464 -
Aip03g04357 473 Pfam Rubisco LSMT substrate-binding 325 447 IPR015353 -
Aip03g04357 473 SUPERFAMILY SET domain 30 295 IPR046341 -
Aip03g04357 473 SMART set_7 48 283 IPR001214 GO:0005515
Aip03g04357 473 Gene3D - 324 468 IPR036464 -
Aip03g04357 473 ProSiteProfiles SET domain profile. 48 277 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip03g04357 SET 5.7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04357 03 127980043 127982778 Aip03g04357 03 127980043 127982778 ECH