Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04349 ATGGACGACGTTAAAGATAAGATGAAAGGCTTCATGAAGAAAGTCAACAACTCTTTCACCTCTTCATCCTCCGCCAAATTCAAGGGACAAGGTCGTGTCTTGGGATCTTCTTCTTCTCCCTCTCCTCCTCCCTATGCAACCGCTAATTCCACTTCCACCCCTCGCCCTCGCCCCCTCAATTCCAATCCCACGCCCCCGCCCCACAAAGCCACCGCCTCTTCCGGCGAGAGGGATCGCAAACCTCCAACTTCTGGGTTCGACCCATTTGATTCATTCGTCACATCATCCAAGAGATCTCAAAACGGGTATTCACTTAATGTATATGAGTGTCCTGTTTGTGGCAATTCTTTTAGATCCGAAGATGAGGTTTCGGAGCATGTGGACACTTGTTTGAGTAACAACGGTGAGCGTGCTGATGTGTCTCAATTGCCAGACACTGGAGCCGACTCCAATGCTGAATTGGAGGTTTGTGTTGGCACTTACGTCTCAGGGAAGCCTTCCCACGGATCCATCGACATTCTTTTGAAGCTGTTGAAGAATGTTGTTAGAGAGCCTGAAAATGCCAAGTTTAGGAAGATCAGATTGGGCAATCCTAAAATTAAGGAGGCTGTTGCCGAGGTTATCGGTGGAACTGAGTTGATTTGCTTTCTTGGCTTTGAACTTAAGGACGAGAATGGCGAGACTTGGGCCGTCATGGAGCTTCCTTCAGAAGAGCAGATAAGATTGATCAAGAAAGCAACACTGTTGCTGGAATCACAGCTGGTGCTGCAAGTATCTCCAAAGAGTGAGAATTTGGCTGCAGCTTCTGCTGACAACATAGATGCAAAACCTGAATCCAAGCCTATCGACAGACAGGTGAAGGTCTTCTTTGCCGTTCCTGAAACTGTTGCAGCAAAAATTGAGCTACCAGATTCCTTCTATAAACTTTCAGTTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATTCCCAAGTCATTAAAGGAAAAGCAAGCAAAAGCTGCCAAGAAGAGATACACAAAAGCTATTATTAGGGTTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTTCTCCATGGGAACCAACTATGGCCCTCTATGAGTTTGTCAGTTCTGCATTGAAACAACCAGGTTTGGAGTTTGAGCTAATGCATCCGGTAGTAGTCCGACGGCAGGCAATCCCTCGGTTCGCCAAAGCAGGGGAGAACAGTAAAACATTGGAGGATGAGGACTTGGTACCTTCAGCTCTAATCAAGTTCAAGCCACTGGAAACAGATTCTGTTGTTTTCACGGGTCTCAAAAACGAATTGCTTCAAATCAGTGAGCCGCTTGTAAATGCTTAA 1374 0.4571 MDDVKDKMKGFMKKVNNSFTSSSSAKFKGQGRVLGSSSSPSPPPYATANSTSTPRPRPLNSNPTPPPHKATASSGERDRKPPTSGFDPFDSFVTSSKRSQNGYSLNVYECPVCGNSFRSEDEVSEHVDTCLSNNGERADVSQLPDTGADSNAELEVCVGTYVSGKPSHGSIDILLKLLKNVVREPENAKFRKIRLGNPKIKEAVAEVIGGTELICFLGFELKDENGETWAVMELPSEEQIRLIKKATLLLESQLVLQVSPKSENLAAASADNIDAKPESKPIDRQVKVFFAVPETVAAKIELPDSFYKLSVEEVRREAELRRKKIEESQLLIPKSLKEKQAKAAKKRYTKAIIRVQFPDGVVLQGVFSPWEPTMALYEFVSSALKQPGLEFELMHPVVVRRQAIPRFAKAGENSKTLEDEDLVPSALIKFKPLETDSVVFTGLKNELLQISEPLVNA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04349 457 Pfam UBX domain 346 426 IPR001012 GO:0005515
Aip03g04349 457 Gene3D - 163 253 - -
Aip03g04349 457 Pfam PUB domain 168 243 IPR018997 -
Aip03g04349 457 Gene3D Classic Zinc Finger 104 135 - -
Aip03g04349 457 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 456 - -
Aip03g04349 457 SUPERFAMILY Ubiquitin-like 317 430 IPR029071 -
Aip03g04349 457 ProSiteProfiles UBX domain profile. 346 430 IPR001012 GO:0005515
Aip03g04349 457 MobiDBLite consensus disorder prediction 14 57 - -
Aip03g04349 457 Gene3D - 340 433 - -
Aip03g04349 457 SUPERFAMILY PUG domain-like 165 253 IPR036339 -
Aip03g04349 457 SMART PGNneu 169 236 - -
Aip03g04349 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 138 IPR013087 -
Aip03g04349 457 MobiDBLite consensus disorder prediction 1 93 - -
Aip03g04349 457 CDD PUB 163 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04349 Aip-Chr3 127924228 127926865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04349 1 378 C2H2 Transcription Factor Family AT2G01650 55.528 1.24e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g04349 UBX 2.6e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04349 03 127924228 127926865 Aip03g04349 03 127924228 127926865 ECH