Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02152 ATGGATCGAAGGACACAATGGAATTTTCGCGCGATTGATTCGCATTATGTATTTGATAGTTCTGAAGTGCGTTTCAGGCATGCTGGCCCTGTACCACACACAGGTCGGCAAATGTATCAACCCAATAGAAGAGGACATTCCAGAACAACTCTTCCCATTGAGTTAGTCCAAGTTGATGGTGTCGCAGTGCTTGTTAATCATTATATAGACACGGAATTGCGCGTTGAAGATATGTCTTATGAGGGATTGAATGCATTGGGCCAGCAGATTGGCCATGTAAGCACTGGTTTATCAGAGGAAATAATAACCAATCAAATGAAGACAAAAACATATTTAATGGCTGCTAGTGCTGTTAATTTGGAGGAGGCTGATGTTTGTGTAATATGCCAGGATGAATATGAGAACCAAGATACCATTGGATTTCTTCCATGTGGGCATGAATATCATGCTGATTGTTTAAGGAAATGGTTGCTTGTGAGAAATGTCTGCCCCTTGTGTAAATCAGAAACATTCATTCTAGGGATGTAA 528 0.4072 MDRRTQWNFRAIDSHYVFDSSEVRFRHAGPVPHTGRQMYQPNRRGHSRTTLPIELVQVDGVAVLVNHYIDTELRVEDMSYEGLNALGQQIGHVSTGLSEEIITNQMKTKTYLMAASAVNLEEADVCVICQDEYENQDTIGFLPCGHEYHADCLRKWLLVRNVCPLCKSETFILGM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02152 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 171 IPR013083 -
Aip03g02152 175 SMART ring_2 126 166 IPR001841 -
Aip03g02152 175 Pfam Ring finger domain 125 167 IPR001841 -
Aip03g02152 175 SUPERFAMILY RING/U-box 109 171 - -
Aip03g02152 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 55 169 IPR045191 GO:0061630
Aip03g02152 175 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
Aip03g02152 175 PANTHER OS04G0185500 PROTEIN 55 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02152 Aip-Chr3 32124440 32125290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02152 60 171 C3H Transcription Factor Family AT2G15530 43.860 6.80e-29 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01513 08 25911110 25914810 Aip03g02152 03 32124440 32125290 PCT