Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02033 ATGCAGTTCACTAGTCCTGTCGAGCAGAATTCTATGCAAACGATCAGTCATTCTCCTGGCTCTAGGATCATGAGCCCAACAACTGGTAGCCACTTGCCAGGGCTGGCTTCAATTTTGCAACCTCAGGTATCGAATACTGTGAAGGGTGCAACTATCGGCAAGGACTTTGGAAGGAGCAATCACGGAGAGCACATTTTTACCAGTATGAATTCAACGCAAGGAACTACTTTTCAGTCACATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGATCTTTGTCCTTGTTTGGTCCATCAACATCAAAATCAAATGAATCTTCGATGGAAACCTTGTCTGGGGCACAGTTTTTATGGGGAAGTCCAACCCTTTACTCAGAGCGTAATAAGCCTTTAGCTTGGCCAAGACCAGCTGCGGTGCATCCATTTACATCAAATGGCAAGGGGCATGGCTTCCCATACTCAAGTCAAAGTACTTCCTACGTTGGGGCATCCCATCATCATAACGATCATCATGTTGGTTCTGCTCCATCAGGTTTGCCACTAGAGAGGCACTTTGGTTTTCCTGAGTCACCTGAAACTTCGATCATGAATAATGTTGGTTATGGAGGCATGGGTCTGGGGCACACTGATGGAAATTACATGGTTAAAACAAGTGGGTCTGTTAATGCTGGCATTACTATTCCGAGAAATATTTCTGAGAACGGTTCATCAAACCTTAGAATGAGATCTTCTCCTAGGCTTAGCCCCGTGTTTTTGGGCAGTGGTCCATATGCAGGACTACCACCTACTATCATGGATAGTTTGACCGACCGTTCTCAGAGCAGATGGATTGAGAAAAATTGTGAAACATCAAACTTTTCCTTCGATGCTCAGATNNNNNNTGGGTACTCCTCCGAGTCGACCCCCGAGCGCAAGGTCGTTGTTCTCGGGGCCGCCGGCGGCATCGGCCAGCCCCTATCCCTCCTCATGAAGCTCAACCCACTCGTGACTAGCCTCTCCCTTTACGATATCGCCGGCACGCCCGGCGTCGCCGCTGATGTCAGCCACGTCAACACCAGATCTGAGGTCGCTGGATATCAAGGCGAAGGAGAGCTTGGAAAAGCTTTGGAGGGAGCTGATGTCGTTATAATCCCAGCTGGTGTTCCCAGGAAGCCTGGAATGACTCGCGATGATCTCTTCAACATTAATGCCGGCATTGTCAAGTCTCTGTGCACTGCTATTTCCAAGTACTGCCCCACGGCCCTTGTTAACATGATTAGCAATCCTGTGAACTCCACTGTTCCCATTGCTGCCGAGGTTTTCAAGAAGGCAGGGACATATGATGAGAAGAGGTTGTTTGGGGTCACCACCCTTGATGTTGTTAGGGCAAAAACTTTTTATGCTGGAAAGGCCAATGTTCCGGTTGCTGGGGTCAATGTACCGGTTATAGGTGGCCATGCAGGCATCACTATTCTGCCATTATTTTCTCAAGCAACACCGAAAGCCAATTTGGATCATGATGTCATAGTAGCTCTTACGAAGAGAACACAAGATGGTGGAACGGAAGTTGTTGAAGCCAAGGCGGGAAAGGGTTCTGCAACTTTGTCAATGGCTTATGCCGGAGCTCTCTTTGCTGATGCTTGTCTCAAGGGCCTCAATGGTGTCCCAGATGTTGTTGAGTGTTCGTTTGTGCAATCTAATGTTACTGAACTTCCTTTCTTCGCTTCAAAGGTGAGACTCGGAAAGAATGGTGTGGAGGAAGTTCTGGGATTGGGGGCTCTTTCAGATTATGAGAAACAAGGCCTTGAAAACCTTAAGCCCGAGCTCTTGGCATCTATTGAGAAGGGAATCAAATTCGCCAACCAATAA 1851 0.4754 MQFTSPVEQNSMQTISHSPGSRIMSPTTGSHLPGLASILQPQVSNTVKGATIGKDFGRSNHGEHIFTSMNSTQGTTFQSHSLPEPKFSQYRGSLSLFGPSTSKSNESSMETLSGAQFLWGSPTLYSERNKPLAWPRPAAVHPFTSNGKGHGFPYSSQSTSYVGASHHHNDHHVGSAPSGLPLERHFGFPESPETSIMNNVGYGGMGLGHTDGNYMVKTSGSVNAGITIPRNISENGSSNLRMRSSPRLSPVFLGSGPYAGLPPTIMDSLTDRSQSRWIEKNCETSNFSFDAQXXXGYSSESTPERKVVVLGAAGGIGQPLSLLMKLNPLVTSLSLYDIAGTPGVAADVSHVNTRSEVAGYQGEGELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAISKYCPTALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKANVPVAGVNVPVIGGHAGITILPLFSQATPKANLDHDVIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSNVTELPFFASKVRLGKNGVEEVLGLGALSDYEKQGLENLKPELLASIEKGIKFANQ 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02033 616 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 450 613 IPR022383 GO:0016616
Aip03g02033 616 ProSitePatterns Malate dehydrogenase active site signature. 449 461 IPR001252 GO:0006108|GO:0016615
Aip03g02033 616 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 306 615 IPR010097 GO:0006099|GO:0030060
Aip03g02033 616 SUPERFAMILY LDH C-terminal domain-like 449 615 IPR015955 GO:0003824|GO:0016616
Aip03g02033 616 Pfam lactate/malate dehydrogenase, NAD binding domain 306 448 IPR001236 GO:0016491
Aip03g02033 616 PANTHER MALATE AND LACTATE DEHYDROGENASE 294 615 - -
Aip03g02033 616 PANTHER MALATE DEHYDROGENASE 294 615 - -
Aip03g02033 616 Gene3D - 450 615 IPR015955 GO:0003824|GO:0016616
Aip03g02033 616 MobiDBLite consensus disorder prediction 150 191 - -
Aip03g02033 616 CDD MDH_glyoxysomal_mitochondrial 306 614 IPR010097 GO:0006099|GO:0030060
Aip03g02033 616 MobiDBLite consensus disorder prediction 150 164 - -
Aip03g02033 616 Gene3D - 304 449 - -
Aip03g02033 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 306 448 IPR036291 -
Aip03g02033 616 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02033 Aip-Chr3 29188095 29191727 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02033 03 29188095 29191727 Aip03g02033 03 29188095 29191727 ECH