LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g01792	ATGAAAACCCCACCTTCCATGGCTTTGAAAGAAAAGAAGAAGCCCGCCACAAAAAACAAGATCAACGGCACCGTCATTACCAACGATGGCAACAATACTAACAATAAAGAGCTTCATTACAGGGGCGTCCGTAAGAGGCCATGGGGCCGTTACGCCGCCGAGATCAGGGATCCGGGGAAGAAGAGCCGCGTCTGGCTCGGAACATTTGACACCGCCGAAGAAGCTGCCATGGCTTACGACGCTGCCGCAAGACAGTTCCGCGGCTCCAAAGCCAAGACCAACTTCCCACTCGCTTCTTCGCCCTCTCCCAACGAAAACGCCAACCTCAACATCAACAAGAATAATAGCGCCGGCGAGAGTCCTAGCCAGAGCAGCACTGTTGAGTCATCAACACCGGAGCGTGAGGTCACGCGCCGCCGCGACGTCTCGGTGATTGAGCGGTTTCCGTTCCTTCCGTTGCAGCAGCCACTTCCGCCGCCGCATCATCAGCTCATGCCGTTTGGCGTTGCCGGCGGTACGGTTGTTGATGGTGTGGTGGCTCCCGTACGGCCGGTTTTCTTTTTAGATCCAACCGTCGGTCGGGCTGAGTTCTTTGGACAAAGCTTTCCCGTACGGTTCGAACCGGGTCCATACGAGATTAGGACCGGGTTTGGAAGTTCGGCACAGAGTGACTCGGATTCTTCCTCCGTCGTTGATTGCCAGCCCAAGAGAGAGCTCAATCTCGATCTCAACCTAGCTCCGCCAATGGATGCTTAA	756	0.5556	MKTPPSMALKEKKKPATKNKINGTVITNDGNNTNNKELHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAMAYDAAARQFRGSKAKTNFPLASSPSPNENANLNINKNNSAGESPSQSSTVESSTPEREVTRRRDVSVIERFPFLPLQQPLPPPHHQLMPFGVAGGTVVDGVVAPVRPVFFLDPTVGRAEFFGQSFPVRFEPGPYEIRTGFGSSAQSDSDSSSVVDCQPKRELNLDLNLAPPMDA	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g01792	251	Gene3D	AP2/ERF domain	39	98	IPR036955	GO:0003700\|GO:0006355
	Aip03g01792	251	MobiDBLite	consensus disorder prediction	93	139	-	-
	Aip03g01792	251	MobiDBLite	consensus disorder prediction	1	37	-	-
	Aip03g01792	251	CDD	AP2	39	96	IPR001471	GO:0003700\|GO:0006355
	Aip03g01792	251	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	27	134	-	-
	Aip03g01792	251	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	169	234	-	-
	Aip03g01792	251	MobiDBLite	consensus disorder prediction	1	18	-	-
	Aip03g01792	251	SUPERFAMILY	DNA-binding domain	39	97	IPR016177	GO:0003677
	Aip03g01792	251	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE	169	234	-	-
	Aip03g01792	251	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE	27	134	-	-
	Aip03g01792	251	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Aip03g01792	251	MobiDBLite	consensus disorder prediction	20	37	-	-
	Aip03g01792	251	MobiDBLite	consensus disorder prediction	93	131	-	-
	Aip03g01792	251	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Aip03g01792	251	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Aip03g01792	251	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Aip03g01792	251	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g01792	Aip-Chr3	22275582	22276892	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g01792	32	249	AP2-EREBP Transcription Factor Family	AT5G44210	47.964	3.68e-50	161

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Aip03g01792		AP2	2.1e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g01792	03	22275582	22276892	Aip03g02141	03	31776075	31776871	ECH
	Aip03g01792	03	22275582	22276892	Aip03g01792	03	22275582	22276892	ECH
	Aip03g01792	03	22275582	22276892	Aip10g00422	10	4162070	4163145	ECH