Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3651 ATGGCTACTTCGAAGGCGGTTATGGCTTCGTTGTTTCACCTGCGTCCGCTAACATGCGCCGCCTCATCGTCCTACCCTGCGCGACTGGTTCCCCACCCACCGGACCTCATCAAGTGGGTTACCAGAGAAGGCGGCTTCGTCCACCCTGCCATCAAGATAGCACTTCATCCCTCCCACGGTCTCGGCTTACTCGCCAACCAACAAATCCCCAAGGGTTCCGACCTTATCGTTCTCCCCGACCACATTCCCTTGAGGTTTAACCACCAAGACGCCACCCACTCTCTCCTCCTTCAGTTGGCACGCCATGTTCCTGAGGAACTGTGGGCCATGAGGCTAGGTTTGAAGCTGCTTCAAGAAAGAGCTAAAGTTGGATCCTTTTGGTGGCCATACATCAGCAATCTCCCGGAAACATACACTGTCCCTATCTTCTTTCCCGGAGAGGATATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTGAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCATGCCTTAGTCAATCTCACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCATCAAGAGCATTCCGTTTATATGGTGACAAACGGCCAGATGGGATCCATATTGACATACCTATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCCAGAATTGTTCAGGAAAAAGACTCTAGTAGCAAAAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTAACTATGGCTGTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACAATCAAACCCGTATGACTGCATTGAACTGAAATACGATGGTGCTCTTTTGGATGCTGCAAGCTCAGCAGCTGGAGTTTCATCACCAAATTTCTCAGCACCTGCTCCATGGCAGGAACAGATTCTTGCTCAGCTAAATCTTGCTGGGGAAGCTTCAGATCTCAAGGTGAGCATAGGTGGTGAAGATGTAGTAGAGGGGCGTTTGTTGGCTGCATTGAGAGTACTCCTTTCAAGTAGTATGGAAACCGTGCAGAAGCATGACCTCAACACACTCAAGTCTTTATCAGCCGAAGCCCCGCTGGGTGTTGCAAATGAGACAGCTGTCTTACGTACGCTTATAGCTCTGTGTGTGATTGCACTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAACAGGGTGCCTTAGGTTCAACGGAATTGGCCATTCAATACAGAATCCAAAAGAAATATGTGATTGTTGATGCCATGAGATCTCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAAGGAAACAACAGTGAGTGCCGAAGGCTAA 1425 0.4674 MATSKAVMASLFHLRPLTCAASSSYPARLVPHPPDLIKWVTREGGFVHPAIKIALHPSHGLGLLANQQIPKGSDLIVLPDHIPLRFNHQDATHSLLLQLARHVPEELWAMRLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKHALVNLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGDKRPDGIHIDIPMMLPLIDMCNHSFNPNARIVQEKDSSSKKMQVKVVAETAIKEDDPLLLNYGCLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASSAAGVSSPNFSAPAPWQEQILAQLNLAGEASDLKVSIGGEDVVEGRLLAALRVLLSSSMETVQKHDLNTLKSLSAEAPLGVANETAVLRTLIALCVIALGHFPTKIMDDESLLKQGALGSTELAIQYRIQKKYVIVDAMRSLSRRVKLLSSKETTVSAEG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3651 474 SMART set_7 49 284 IPR001214 GO:0005515
Ahy3g3651 474 ProSiteProfiles SET domain profile. 49 278 IPR001214 GO:0005515
Ahy3g3651 474 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 469 - -
Ahy3g3651 474 CDD SET_LSMT 50 292 - -
Ahy3g3651 474 Pfam Rubisco LSMT substrate-binding 326 448 IPR015353 -
Ahy3g3651 474 Pfam SET domain 60 278 IPR001214 GO:0005515
Ahy3g3651 474 Gene3D - 323 469 IPR036464 -
Ahy3g3651 474 SUPERFAMILY SET domain 31 296 IPR046341 -
Ahy3g3651 474 PANTHER F21J9.27 6 469 - -
Ahy3g3651 474 Gene3D set domain protein methyltransferase, domain 1 7 291 - -
Ahy3g3651 474 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 468 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3651 Ahy-Chr3 135838174 135841480 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy3g3651 SET 3.60E-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3923 13 138648567 138652164 Ahy3g3651 3 135838174 135841480 hybridization