Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3644 ATGGACGACGTTAAAGATAAGATGAAAGGCTTCATGAAGAAAGTCAACAACTCTTTCACCTCTTCATCCTCCGCCAAATTCAAGGGCCAAGGTCGCGTCTTGGGATCTTCTTCTTCTCCCTCTCCTCCTCCCTATGCAACCGCTAATTCCACTTCCACCCCTCGCCCTCGCCCCCTCAATTCCAATCCCACGCCCCCTCCCCACAAAGCCACCGCCTCTTCCGCCGAGAGGGATCCCAAACCTCCAACTTCTGGGTTCGACCCATTTGATTCATTCGTCACATCATCCAAGAGATCTCAAAACGGGTATTCACTTAATGTATATGAGTGTCCTGTTTGTGGCAATTCTTTTAGATCCGAAGATGAGGTTTCTGAGCATGTGGACACTTGTTTGAGTAACAACGCTGAGCGTGGTGATGTGTCTCAATTGGCAGACACTGGAGCCGACTCCAATGCTGAATTGGAGGTTTGTGTTGGCACTTACGTCTCAGGGAAGCCTTCCCACGGATCCATCGACATTCTTTTGAAGCTGTTGAAGAATGTTGTTAGAGAGCCTGAGAATGCCAAGTTTAGGAAGATCAGATTGGCCAATCCTAAAATTAAGGAGGCTATTGCCGAGGTTATCGGTGGAACTGAGTTGATTTGCTTTCTTGGCTTTGAACTTAAGGACGAGAATGGCGAGACTTGGGCCGTCATGGAGCTTCCTTCAGAGGAGCAGATAAGATTGATCAACAAAGCAACACTGTTGCTGGAATCACAGCAAGTATCTCCAAAGAGTGAGAATTTGGCTGCAGCTTCTGCTGACAACATAGATGCAAAACCTGAATCCAAGCCTATCGACAGACAGGTGAAGGTCTTCTTTGCCGTTCCTGAAACTATTGCAGCAAAAATTCAGCTACCAGATTCCTTCTATAAACTTTCAGTTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATTCCCAAGTCATTAAAGGAAAAGCAAGCAAAAGCTGCCAAGAAGAGATACACAAAAGCTATTATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTTCTCCATGGGAACCAACTATGGCCCTCTATGAGTTTGTTAGCTCTGCACTGAAACAACCATGTTTGGAGTTTGAGCTAATGCATCCGGTAGTAGTCCGACGGCAGGCAATCCCTCGGTTCGCCAAAGCAGGGGAGAACAGTAAAACATTGGAGGATGAGGACTTGGTACCTTCAGCTCTAATCAAGTTCAAGCCACTGGAAACAGATTCTGTTGTTTTCACGGGTCTCAAAAACGAATTGCTTCAAATCAGTGAGCCGCTTGTAAATGCTTAA 1365 0.4549 MDDVKDKMKGFMKKVNNSFTSSSSAKFKGQGRVLGSSSSPSPPPYATANSTSTPRPRPLNSNPTPPPHKATASSAERDPKPPTSGFDPFDSFVTSSKRSQNGYSLNVYECPVCGNSFRSEDEVSEHVDTCLSNNAERGDVSQLADTGADSNAELEVCVGTYVSGKPSHGSIDILLKLLKNVVREPENAKFRKIRLANPKIKEAIAEVIGGTELICFLGFELKDENGETWAVMELPSEEQIRLINKATLLLESQQVSPKSENLAAASADNIDAKPESKPIDRQVKVFFAVPETIAAKIQLPDSFYKLSVEEVRREAELRRKKIEESQLLIPKSLKEKQAKAAKKRYTKAIIRIQFPDGVVLQGVFSPWEPTMALYEFVSSALKQPCLEFELMHPVVVRRQAIPRFAKAGENSKTLEDEDLVPSALIKFKPLETDSVVFTGLKNELLQISEPLVNA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3644 454 Pfam PUB domain 168 244 IPR018997 -
Ahy3g3644 454 SUPERFAMILY PUG domain-like 165 253 IPR036339 -
Ahy3g3644 454 Pfam UBX domain 343 423 IPR001012 GO:0005515
Ahy3g3644 454 Gene3D - 337 430 - -
Ahy3g3644 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 138 IPR013087 -
Ahy3g3644 454 SUPERFAMILY Ubiquitin-like 314 427 IPR029071 -
Ahy3g3644 454 SMART PGNneu 169 236 - -
Ahy3g3644 454 MobiDBLite consensus disorder prediction 14 57 - -
Ahy3g3644 454 Gene3D - 163 253 - -
Ahy3g3644 454 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 453 - -
Ahy3g3644 454 Gene3D Classic Zinc Finger 104 135 - -
Ahy3g3644 454 ProSiteProfiles UBX domain profile. 343 427 IPR001012 GO:0005515
Ahy3g3644 454 MobiDBLite consensus disorder prediction 1 93 - -
Ahy3g3644 454 CDD PUB 163 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3644 Ahy-Chr3 135774800 135777491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3644 1 375 C2H2 Transcription Factor Family AT2G01650 55.696 8.10e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy3g3644 UBX 3.80E-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3915 13 138590706 138593367 Ahy3g3644 3 135774800 135777491 hybridization