Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1579 ATGGCCAACAGTAACCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCACCGGGAATTAGTGCTTCCCCTTCGGAAGATAATATGCGATATTTCAATGTCATGATCCTCGGGCCGACCCAGTCACCGTACGAAGGTGGAGTCTTCAAATTAGAGCTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCGAAGGTTAGGTTTCTGACGAAAATATATCACCCAAACATTGACAAGCTTGGCAGGATATGTCTTGATATTCTTAAAGATAAGTGGAGTCCTGCCCTTCAGATACGCACCGTTCTTTTGAGTATTCAGGCTCTTTTGAGTGCACCAAACCCGGACGATCCACTTTCTGAGAACATTGCAAAGCACTGGAAATCAAATGAGGCTGAGGCTGTTGAAACAGCGAAGGAATGGACTCGATTATATGCAAGCGGTGCCTGA 462 0.461 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1579 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Ahy3g1579 153 SMART ubc_7 8 151 - -
Ahy3g1579 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Ahy3g1579 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Ahy3g1579 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
Ahy3g1579 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Ahy3g1579 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Ahy3g1579 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Ahy3g1579 153 CDD UBCc 7 146 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1579 Ahy-Chr3 28987738 28992192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1579 8 118 Miscellaneous Gene Families AT3G17000 29.060 1.15e-11 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1460 18 28695780 28698935 Ahy3g1579 3 28987738 28992192 PCT
Ahy7g2104 7 79075216 79078432 Ahy3g1579 3 28987738 28992192 PCT
Ahy3g1579 3 28987738 28992192 Ahy18g1460 18 28695780 28698935 PCT
Ahy3g1579 3 28987738 28992192 Ahy7g2104 7 79075216 79078432 PCT