Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0424 ATGGCTCCCAGGGATAAGACGGCTGCCGTTAAGGTTAACGGCAAAGGTAGCGCCGGCGTCAAAGAGGTACATTTTAGGGGTGTTAGGAAGAGGCCATGGGGAAGGTACGCTGCTGAGATCAGAGATCCAGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACCGCCGAGGACGCAGCGCGTGCATACGACGCCGCCGCCCGAGAGTTCCGTGGCCCAAAGGCTAAGACCAACTTCCCCTTTCCTGATTCCGACGACAACAACAATAACAACATCGTCGTCGTTAAGAACAACAACCGCAGCCCCAGCCAGAGCAGCACCGTCGAATCTTCCAGCCGGGACCGCGACTCCTACTCTGCCGCTGCCACCGCAGCAGCTGATTCGTCGCCCTTAGACCTTAACTTGGCCCCCGCTGGAGCTGGATTCTCCGGATCCATTCGGTTCCCATTCCAGCAGCCGTTCGCTGTGTTTCCCTGCCGGATGCCGGCGGCGAAGCAGGCTCTGTACCTCGACGCGGTGCTGCGCGCCGGCATGGTTGGTCACGGCCAGTTCGGTTTTGGTTATAACCGTCCCGCGGCGGCGGGAGCGCAGAGTGACTCGGACTCTTCGTCGGTAATTGATCTGAACCAGCACGACCGCGATGTCGCTAAGAATAACGGAAGAGGCTTAGTTCTAGACCTGAACGAACCTCCTCCACAAGAGATGGCTTGA 714 0.591 MAPRDKTAAVKVNGKGSAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDAAAREFRGPKAKTNFPFPDSDDNNNNNIVVVKNNNRSPSQSSTVESSSRDRDSYSAAATAAADSSPLDLNLAPAGAGFSGSIRFPFQQPFAVFPCRMPAAKQALYLDAVLRAGMVGHGQFGFGYNRPAAAGAQSDSDSSSVIDLNQHDRDVAKNNGRGLVLDLNEPPPQEMA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0424 237 MobiDBLite consensus disorder prediction 75 120 - -
Ahy20g0424 237 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Ahy20g0424 237 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Ahy20g0424 237 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Ahy20g0424 237 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 218 - -
Ahy20g0424 237 MobiDBLite consensus disorder prediction 82 120 - -
Ahy20g0424 237 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Ahy20g0424 237 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Ahy20g0424 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 218 - -
Ahy20g0424 237 MobiDBLite consensus disorder prediction 197 237 - -
Ahy20g0424 237 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Ahy20g0424 237 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Ahy20g0424 237 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0424 Ahy-Chr20 4283480 4284659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0424 1 91 AP2-EREBP Transcription Factor Family AT5G44210 67.677 1.44e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy20g0424 AP2 7.00E-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0424 20 4283480 4284659 Ahy20g0424 20 4283480 4284659 ECH
Ahy13g1924 13 33000766 33002052 Ahy20g0424 20 4283480 4284659 ECH
Ahy18g0925 18 11572269 11573393 Ahy20g0424 20 4283480 4284659 ECH
Ahy13g1590 13 23090123 23091397 Ahy20g0424 20 4283480 4284659 ECH
Ahy20g0424 20 4283480 4284659 Ahy10g0242 10 2193787 2194980 hybridization