Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy18g1419 ATGGATAAGATGATAGCTTCAGAGATGGACCAACATAGACAAGGTTATTTTCATTCAGAACCCGGTATCCTTCCAAGAGGCACTGGCATCTCGCATCCTAATATCCGTACAATTGTGGCAGCTTCCGGGAGCACAAGTAATCATGATTCCCACTATTTACCACCAGATGCATATGACAATGGCGTATATGTGACACAGTATAACGGGGTTCAACCGCAACATAATCGTAACATGGCCGTTGCAGCCACGCCGAATTTATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGTGTATTCCCTATGCCTCTAAATCATAGAGGCTCTGATCAATTGCCTGGTTCGGGCCCGTATGCAGTGTCTTTAGTTTCTTCGGATAATTTTGGAAGAAGCAGCAGCTTCATGGATGATGTCAGAGGTCCTTACAAGAGGAAAAGTGCTGAAGGCATGAGAGGAAATTATCAGTATTTTAATGCTCCGGCTAGTTCCTCAACTGCTCCCCCTAATGCTAGGCATGCCGACGGGGTTCCGGTAATGGATACTGCGTCTTTTCCTCTGCGCGTCCCTTCATTTGTGGAAGTAGGACCACATGGTAATGCATGGAGCAGATCAGGTGATTCCATTATGGTGCACGATCATAACCATTTGATTCGAGGAAACTATGTAGGGCAGCACTTTCAGCCGGCAGCACCTCCGTGGTTGGACCAGCAGTTGAATAGTAATAACAACGATGGTCATACAACAGCATGGAATCAGTCTCTTCCAATGCCTTATATGCATGCTCCAAATGTTAATGGAGGTTCAATAGAGAGTGCAAGTATGGGTTTGCCAAGGTATCACGAAACGGCGAGCAACAGAAACGGCCTTAGATTTCCTCATCCTCCTCCGGTCAATCACCAGCACCATAATTATCATCATCCGGCACTGCCTATGCAAGGAGTAAGAGGTCACGGTGTTAACTTCCACCCTCCTGTAACTGCGGCTTCATTCAGAGTTCCAACGAATCCTTCACACAGTGCTGCAATGCCCACGCCTAATGGTTTCGAGATGGGCCCCAGGCATGTGGGCCCTGTGCCATCAGGAGGCCTACGCATCTACCGACCTCATAGGGGAGTCATGCATGAAACTATTGGTCACCGAAATATTCCCCCCATGGGTTTCCTTCATGTTGATGATGTTGCTCTAATCGATGAGGTGGGAAATTTGGTTGACCATCACCGAGACATGCGCATGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATCGGCAACGTAAGCACTGGTTTATCAGAGGAAACAATTGCGGCCCAATTGAAAACAAAATCATATTTCAAACCGATTTCTGCTACTAATTCAGATGAGGCAGCCTTGGACGACTGCGAAGCTGATTCTTGCATTATATGCCAGGATGAATACAAGAACAAAGAGAAGATCGGAGTTCTGCGATGCGAGCACGAGTACCATGCGGATTGCTTGAGGAAGTGGTTGATTGTGAAGAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGGGAAGGATGTATAG 1572 0.4682 MDKMIASEMDQHRQGYFHSEPGILPRGTGISHPNIRTIVAASGSTSNHDSHYLPPDAYDNGVYVTQYNGVQPQHNRNMAVAATPNLYYSGMNPSSSTGVFPMPLNHRGSDQLPGSGPYAVSLVSSDNFGRSSSFMDDVRGPYKRKSAEGMRGNYQYFNAPASSSTAPPNARHADGVPVMDTASFPLRVPSFVEVGPHGNAWSRSGDSIMVHDHNHLIRGNYVGQHFQPAAPPWLDQQLNSNNNDGHTTAWNQSLPMPYMHAPNVNGGSIESASMGLPRYHETASNRNGLRFPHPPPVNHQHHNYHHPALPMQGVRGHGVNFHPPVTAASFRVPTNPSHSAAMPTPNGFEMGPRHVGPVPSGGLRIYRPHRGVMHETIGHRNIPPMGFLHVDDVALIDEVGNLVDHHRDMRMDIEDMSYEDLLALGERIGNVSTGLSEETIAAQLKTKSYFKPISATNSDEAALDDCEADSCIICQDEYKNKEKIGVLRCEHEYHADCLRKWLIVKNVCPICKSEALTPGGKDV* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy18g1419 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Ahy18g1419 523 Pfam Ring finger domain 469 512 IPR001841 -
Ahy18g1419 523 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 520 - -
Ahy18g1419 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 516 IPR013083 -
Ahy18g1419 523 SMART ring_2 471 511 IPR001841 -
Ahy18g1419 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 520 IPR045191 GO:0061630
Ahy18g1419 523 SUPERFAMILY RING/U-box 470 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy18g1419 Ahy-Chr18 27199306 27203084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy18g1419 388 516 C3H Transcription Factor Family AT2G15530 47.015 1.56e-34 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1419 18 27199306 27203084 Ahy18g1419 18 27199306 27203084 ECH
Ahy18g1419 18 27199306 27203084 Ahy7g2128 7 79689678 79693447 hybridization
Ahy18g1419 18 27199306 27203084 Ahy13g1935 13 33366699 33367674 PCT
Ahy13g1935 13 33366699 33367674 Ahy18g1419 18 27199306 27203084 PCT