Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3949 ATGGTGGGGAATAATCATTCACAAAGGGAAAGGGAAAGGAATAGAGATTGGATTAAAGTTCTTATGAATAGCAATGGCCACTGTGATGATCATCCCGATCTTCGTTCTAAGGAAAAGAATTTTTTCTGTGTAGACTGTGCAGTTAGAATGTGTAAGAACTGTAAGGAAGCTCATTCCCTTCACAGAAGGTTTCAGATATACAAATATTCCTATCAAGATGTCTTCCGCCATTCCGAGCTGCAGAAATACTTTGACTGCTCAAAAATTCAGACTTACATATCCAACAATGAAAGGATTGTGCATCTAAAACCCCGGCCTTCAACTAATAAACCTAAAACTTCTGATCTAAGCCCTGATTCTAAATTCAAAGAATACAACTTTTCATCAAGAACAAAGCCGGGTGGTACATGTGAAGAATGTGGGAAACACTTACAAGATGAGCGGAATCGCTTCTGCTCTATTACGTGCAAGGTCTCAGTGCTTCCCTTGGAAGCTCAAAACCAAGATCACAATCAATGTTCACGGAGGAGTTCAGAGGAATCTGCTAGTCAAAGTAGTAGGTTCATCAACACTCCAAAACCAGAAGGTAGTGATTTTACTTTAGATAACCAGAATTCAGAACCAGAGTCATCTTTATCTGAAGCTGAGCCATATGGATGGGTTGAAGTTGTTAACTACAGAAAGCGCCCAAGGAAAACAACCCCTCAAAGGCCTATTTTTGTTTTCATGTCCTAA 735 0.3973 MVGNNHSQRERERNRDWIKVLMNSNGHCDDHPDLRSKEKNFFCVDCAVRMCKNCKEAHSLHRRFQIYKYSYQDVFRHSELQKYFDCSKIQTYISNNERIVHLKPRPSTNKPKTSDLSPDSKFKEYNFSSRTKPGGTCEECGKHLQDERNRFCSITCKVSVLPLEAQNQDHNQCSRRSSEESASQSSRFINTPKPEGSDFTLDNQNSEPESSLSEAEPYGWVEVVNYRKRPRKTTPQRPIFVFMS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3949 244 SMART bboxneu5 23 66 IPR000315 GO:0008270
Ahy13g3949 244 MobiDBLite consensus disorder prediction 107 121 - -
Ahy13g3949 244 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 238 - -
Ahy13g3949 244 MobiDBLite consensus disorder prediction 167 212 - -
Ahy13g3949 244 Pfam B-box zinc finger 24 63 IPR000315 GO:0008270
Ahy13g3949 244 ProSiteProfiles Zinc finger B-box type profile. 23 66 IPR000315 GO:0008270
Ahy13g3949 244 MobiDBLite consensus disorder prediction 102 121 - -
Ahy13g3949 244 Pfam PLATZ transcription factor 68 158 IPR006734 -
Ahy13g3949 244 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 238 - -
Ahy13g3949 244 MobiDBLite consensus disorder prediction 167 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3949 Ahy-Chr13 138860190 138862394 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ahy13g3949 PLATZ 8.20E-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3949 13 138860190 138862394 Ahy13g3949 13 138860190 138862394 ECH
Ahy13g3949 13 138860190 138862394 Ahy3g3675 3 136075995 136078108 hybridization