Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3923 ATGGCTACTTCGAAGGCGGTTATGGCTTCCTTGACGCACCTGCGTCCGCTAACATGCGCCGCCTCATCGTCCTACCCTGCGCGACTGGTTCCCCACCCACCGGACCTCATCAAGTGGGTCACCAGAGAAGGCGGCTTCGTCCACCCTGCCATCAAGATAGCGCTTCATCCCTCCCACGGTCTCGGCTTACTCGCCAACCAACAAATCCCCAAGGGTTCCGACCTTATCGTTCTCCCCGACCACATTCCCTTGAGGTTTAACCACCAAGACGTCACCCACTCTCTCCTCCTTCAATTGGCACGCCATGTTCCTGAGGAACTGTGGGCCATGAGGCTAGGTTTGAAGCTGCTTCAAGAAAGAGCTAAAGTTGGATCCTTTTGGTGGCCATACATCAGCAATCTCCCGGAAACATACACTGTCCCTATCTTCTTCCCCGGAGAGGATATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTGAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCATTCCTTAGTCAATCTCACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCATCAAGAGCATTCCGTTTATATGGTGACAAACGGCCAGATGGGATCCATATTGACATACCTATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCCAGAATTGTTCAGGAAAAAGACTCTAGTAGCATAAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTAACTATGGCTGTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACAATCAAACCCGTATGACTGCATTGAACTGAAATACGATGGTGCTCTTTTGGATGCTGCAAGCTCAGCAGCTGGAGTTTCATCACCAAATTTCTCAGCACCTGCTCCATGGCAGGAACAGATTCTTGTTCAGCTAAATCTTGCTGGGGAAGCTTCAGATCTCAAGGTGAGCATAGGTGGTGAAGATGTAGTAGAGGGGCGTTTGTTGGCGGCATTGAGAGTACTCCTTTCAAGTAGTATGGAAACCGTACAGAAGCATGACCTCAACACACTCAAGTCTTTATCAGCCGAAGCCCCGCTGGGTGTTGCAAATGAAACAGATGTCTTGCGTACGCTTATAGCTCTGTGTGTGATTGCACTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAGCAGGGTGCCTCAGGTTCAACGGAATTGGCCATTCAATACAGAATCCAAAAGAAATCTGTGATTGTTGATGCCATGAGATCTCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAAGGAAACAACAGTGAGTGCCGAAGGCTAA 1425 0.4695 MATSKAVMASLTHLRPLTCAASSSYPARLVPHPPDLIKWVTREGGFVHPAIKIALHPSHGLGLLANQQIPKGSDLIVLPDHIPLRFNHQDVTHSLLLQLARHVPEELWAMRLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKHSLVNLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGDKRPDGIHIDIPMMLPLIDMCNHSFNPNARIVQEKDSSSIKMQVKVVAETAIKEDDPLLLNYGCLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASSAAGVSSPNFSAPAPWQEQILVQLNLAGEASDLKVSIGGEDVVEGRLLAALRVLLSSSMETVQKHDLNTLKSLSAEAPLGVANETDVLRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKSVIVDAMRSLSRRVKLLSSKETTVSAEG* 475
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3923 474 ProSiteProfiles SET domain profile. 49 278 IPR001214 GO:0005515
Ahy13g3923 474 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 469 - -
Ahy13g3923 474 Pfam Rubisco LSMT substrate-binding 326 448 IPR015353 -
Ahy13g3923 474 Gene3D set domain protein methyltransferase, domain 1 3 291 - -
Ahy13g3923 474 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 468 IPR036464 -
Ahy13g3923 474 PANTHER F21J9.27 5 469 - -
Ahy13g3923 474 SUPERFAMILY SET domain 31 296 IPR046341 -
Ahy13g3923 474 CDD SET_LSMT 50 292 - -
Ahy13g3923 474 SMART set_7 49 284 IPR001214 GO:0005515
Ahy13g3923 474 Pfam SET domain 60 278 IPR001214 GO:0005515
Ahy13g3923 474 Gene3D - 325 469 IPR036464 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ahy13g3923 Ahy-Chr13 138648567 138652164 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy13g3923 SET 5.70E-10 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3923 13 138648567 138652164 Ahy13g3923 13 138648567 138652164 ECH
Ahy13g3923 13 138648567 138652164 Ahy3g3651 3 135838174 135841480 hybridization