Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1935 ATGCGAGCCACGGCAATGGATCGAAGGACACAATGGAATTTTCGCGCGATTGATTCGCATTATGTATTTGATAGTTCTGAAGTGCGTTTCAGGCATGCTGGCCCTGTACCACACACAGGTCGGCAAATGTATCAACCCAATAGAAGAGGACATTCCAGAACAACTCTTCCCATTGAGTTAGTCCAAGTTGATGGTGTCGCAGTGCTTGTTAATCATTATATAGACACGGAATTGCGCGTTGAAGATATGTCTTATGAGGGATTGAATGCATTGGGCCAGCAGATTGGCCATGTAAGCACTGGTTTATCAGAGGAAATAATAACCAATCAAATGAAGACAAAAACATATTTAATGGCTGCTAGTGCTGTTAATTTGGAGGAGGCTGATGTTTGTGTAATATGCCAGGATGAATATGAGAACCAAGATACTATTGGATTTCTTCCATGTGGGCATGAATATCATGCTGATTGTTTAAGGAAATGGTTGCTTGTGAGAAATGTCTGCCCCTTGTGTAAATCAGAAACATTCATTCTAGGGATGTAA 543 0.4125 MRATAMDRRTQWNFRAIDSHYVFDSSEVRFRHAGPVPHTGRQMYQPNRRGHSRTTLPIELVQVDGVAVLVNHYIDTELRVEDMSYEGLNALGQQIGHVSTGLSEEIITNQMKTKTYLMAASAVNLEEADVCVICQDEYENQDTIGFLPCGHEYHADCLRKWLLVRNVCPLCKSETFILGM* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1935 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 58 174 IPR045191 GO:0061630
Ahy13g1935 180 SUPERFAMILY RING/U-box 114 176 - -
Ahy13g1935 180 SMART ring_2 131 171 IPR001841 -
Ahy13g1935 180 PANTHER OS04G0185500 PROTEIN 58 174 - -
Ahy13g1935 180 ProSiteProfiles Zinc finger RING-type profile. 131 172 IPR001841 -
Ahy13g1935 180 Pfam Ring finger domain 130 172 IPR001841 -
Ahy13g1935 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1935 Ahy-Chr13 33366699 33367674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1935 65 176 C3H Transcription Factor Family AT2G15530 43.860 6.12e-29 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1419 18 27199306 27203084 Ahy13g1935 13 33366699 33367674 PCT
Ahy7g2128 7 79689678 79693447 Ahy13g1935 13 33366699 33367674 PCT
Ahy13g1935 13 33366699 33367674 Ahy18g1419 18 27199306 27203084 PCT
Ahy13g1935 13 33366699 33367674 Ahy7g2128 7 79689678 79693447 PCT