Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1924 ATGGCACCCAGGGACCTACCCGCTGTTCTTTCCGGATCCAACTCGATCCAACCACTCTCCAGAGAGATCCGATACAGAGGGGTGAGGAAGAGGCCATGGGGCCGCTACGCCGCCGAGATCCGCGATCCTGGCAAGAAGACACGTGTCTGGCTCGGCACTTTCGACACGGCTGAGGAGGCTGCACGTGCCTACGACTCCGCGGCACGTGAGTTCCGCGGACTTAAGGCAAAGACCAATTTCCCCACCCCGTCGGAGATCATCAACAGCCCCGCCGCGCGTAGTCCTAGCCAGAGCAGCACTCTAGACTCTTCCTCTCCTCTGCCGCCGGCACCCACGCCGCCAATGCTCGACCTCACACTCTCCCCCTTAGCCGCCTCCGCCGACACAACGATGGTGTTCCCGGTGGCTCGCCCGGTTATGTTCTTCGAAGCGTTCGCTCGTGCTGGGATGTGCGGGTTTGACCGCCCCGTTGCCGATTTTCGACGCGCCGCTGTTGCCGTTGCTGCCTCCGGCGCAGCGCATAGCGATTCTGATTCGTCCTCGGTCGTGGATTATGAGCGTGTGCCTCATCGGAGACTGATGGATCTTGACCTCAACGTTCCTCCTCCCCCTGAGGTAGCCTGGTCTGGCGGTTAA 636 0.6179 MAPRDLPAVLSGSNSIQPLSREIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDSAAREFRGLKAKTNFPTPSEIINSPAARSPSQSSTLDSSSPLPPAPTPPMLDLTLSPLAASADTTMVFPVARPVMFFEAFARAGMCGFDRPVADFRRAAVAVAASGAAHSDSDSSSVVDYERVPHRRLMDLDLNVPPPPEVAWSGG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1924 211 Coils Coil 57 77 - -
Ahy13g1924 211 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Ahy13g1924 211 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Ahy13g1924 211 MobiDBLite consensus disorder prediction 82 115 - -
Ahy13g1924 211 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Ahy13g1924 211 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Ahy13g1924 211 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Ahy13g1924 211 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Ahy13g1924 211 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Ahy13g1924 211 MobiDBLite consensus disorder prediction 82 105 - -
Ahy13g1924 211 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Ahy13g1924 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 198 - -
Ahy13g1924 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 11 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1924 Ahy-Chr13 33000766 33002052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1924 13 173 AP2-EREBP Transcription Factor Family AT3G15210 53.714 1.46e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy13g1924 AP2 1.70E-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0925 18 11572269 11573393 Ahy13g1924 13 33000766 33002052 ECH
Ahy13g1590 13 23090123 23091397 Ahy13g1924 13 33000766 33002052 ECH
Ahy13g1924 13 33000766 33002052 Ahy20g0424 20 4283480 4284659 ECH
Ahy13g1924 13 33000766 33002052 Ahy13g1924 13 33000766 33002052 ECH