Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0242 ATGGCTCCCAGGGATAAGACGGCTGCCGTTAAGGTTAACGGCAAAGGTAGCGCCGGCGTTAAAGAGGTACATTTTAGGGGTGTTAGGAAGAGGCCATGGGGAAGGTACGCTGCTGAGATCAGAGATCCAGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACCGCCGAGGACGCAGCGCGTGCATACGACGCCGCCGCTCGAGAGTTCCGTGGCCCAAAGGCTAAGACCAACTTCCCCTTTCCTGATTCCGACGACAACAACAATAACAACATCGTCGTCGTTAAGAACAACAACCGCAGCCCCAGCCAGAGCAGCACCGTCGAATCTTCCAGCCGGGACCGCGACTCCTACTCCGCCGCTGCCACCGCAGCAGCTGATTCGTCGCCCTTAGACCTTAACTTAGCCCCCGCTGGAGCTGGATTCTCCGGATCCATTCGGTTCCCATTCCAGCAGCCGTTCGCGGTGTTTCCCTGCCGGATGCCGGCGGCGAAGCAGGCTCTGTACCTCGACGCGGTGCTGCGTGCCGGCATGGTTGGTCACGGCCAGTTCGGTTTTGGTTATAACCGTCCCGCGGCGGCGGGAGCGCAGAGTGACTCGGACTCTTCCTCGGTGATTGATCTGAACCAGCACGACGGCGATGTCGCTAAGAATCACGGAAGAGGCTTAGTTCTAGACCTGAACGAACCTCCTCCACAAGAGATGGCTTGA 714 0.591 MAPRDKTAAVKVNGKGSAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDAAAREFRGPKAKTNFPFPDSDDNNNNNIVVVKNNNRSPSQSSTVESSSRDRDSYSAAATAAADSSPLDLNLAPAGAGFSGSIRFPFQQPFAVFPCRMPAAKQALYLDAVLRAGMVGHGQFGFGYNRPAAAGAQSDSDSSSVIDLNQHDGDVAKNHGRGLVLDLNEPPPQEMA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0242 237 MobiDBLite consensus disorder prediction 75 120 - -
Ahy10g0242 237 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Ahy10g0242 237 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Ahy10g0242 237 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Ahy10g0242 237 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Ahy10g0242 237 MobiDBLite consensus disorder prediction 82 120 - -
Ahy10g0242 237 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Ahy10g0242 237 MobiDBLite consensus disorder prediction 197 237 - -
Ahy10g0242 237 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Ahy10g0242 237 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Ahy10g0242 237 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Ahy10g0242 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 217 - -
Ahy10g0242 237 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0242 Ahy-Chr10 2193787 2194980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0242 1 91 AP2-EREBP Transcription Factor Family AT5G44210 67.677 1.72e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy10g0242 AP2 7.00E-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0424 20 4283480 4284659 Ahy10g0242 10 2193787 2194980 hybridization