Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g3359 ATGGACGACGTTAAAGACAAGGTAAAGGGTTTCATGAAGAAAGTCAACAACCCTTTCTCTTCCTCTCCCTCCGGCAAATTCAAGGGCCAAGGTCGAGTCTTGGGATCTTCTCCTTCTTCTTCTTCTTCTACCCCAAGTAATTCCAATCATACCCCTCGCCCCATCCCAACGCAGAACCTCAATCCCAAACCCACTTCTTCTTCTTCTTCAACCAATCCCAGGCCCTTGCCCCAGAAAACCATCGATTCCGAGCAGAACAGGACCCAGAGGGATCGCAAACCGGGAGATGCGTTTGACCCTTTTGATTCTTTGGTCACCTCATCCAAGAGATCTCAAAATGGGTATACACTGAACGTTTATGAATGCCCGATTTGTGGGAAATCGTTTGGATCCGAAGAAGAGGTGTCTGAACACGTGGATAGCTGTTTGAGCAATGGTAATTCATCCGAGCGTGACGGTGGAAATGGTGTCTCGGAATTGCAAGAGAGTCTTGCTGAGTCCAATGATGGTGAGTTGGAGGTTTGTGTTGGCACTTACGTTTCAGGTAAGCCATCCGAGGGATCGGTAGACGTTGTTCTGAAGCTCTTGAGGAATATTGTTAGGGAACCTGAGAATGCCAAGTTCAGGAAGATCAGGCTGAGTAATCCGAAGATCAAGGAAGCTGTTGGTGAGGTTGCTGGGGGAGTTGAGTTGCTCAGCCTTGTTGGGTTTGAGCTGAAGGAGGAGAATGGGGAGACATGGGCAGTGATGGAGGTTCCTTCAGAGAAGCAGATTAGATTGATCAAGAAAGCAATAGCGTTGCTGGAATCGCAACTGGTTCAAGAACCTCCAAAAACCGAGACTTTGGCTCCTGCAACTTCTTCTGAGTCAGATACAAAACCTGAACCAAAGCCCGTCGACAGACAGGTGAAGGTCTTCTTTGCTGTTCCCGAAAGTGTTGCAGCGAAAATCGAGCTACCGGATTCCTTCTATAAACTTTCAGTTGAAGAGGTGAGGAGAGAAGCTGAGTTAAGAAGAAAAAAGATTGAGGAGTCTCAGCTTTTAATCCCAAAGTCACTAAAAGAAAAGCAAGCAAAAGCAGCCAGGAAGAGATACACTGAAGCTATTATTAGGATTCAATTTCCAGATGGAGTTGTACTTCAGGGTGTATTTTCTCCATGGGAACCAACTACTGTCCTCTATGAGTTTGTGAGCTCCGCATTAAAAGAGCCATGTTTAGAGTTTGAGCTGATCCATCCGGTACCTATCCAACGGCGAGTAATCCCTCATTTTGCGAAAGCAGGGGAGAAAGCCAAGACATTGGAGGATGAGGGCCTGGTTCCTTCAGCCCTAATCAAGTTCAAGCCCCTCGAAACAGATTCTGTTGTCTTCACCGGTCTCAGAAACGAACTGCTTGAAATGAGTGAACCACTCGCGTGA 1419 0.4693 MDDVKDKVKGFMKKVNNPFSSSPSGKFKGQGRVLGSSPSSSSSTPSNSNHTPRPIPTQNLNPKPTSSSSSTNPRPLPQKTIDSEQNRTQRDRKPGDAFDPFDSLVTSSKRSQNGYTLNVYECPICGKSFGSEEEVSEHVDSCLSNGNSSERDGGNGVSELQESLAESNDGELEVCVGTYVSGKPSEGSVDVVLKLLRNIVREPENAKFRKIRLSNPKIKEAVGEVAGGVELLSLVGFELKEENGETWAVMEVPSEKQIRLIKKAIALLESQLVQEPPKTETLAPATSSESDTKPEPKPVDRQVKVFFAVPESVAAKIELPDSFYKLSVEEVRREAELRRKKIEESQLLIPKSLKEKQAKAARKRYTEAIIRIQFPDGVVLQGVFSPWEPTTVLYEFVSSALKEPCLEFELIHPVPIQRRVIPHFAKAGEKAKTLEDEGLVPSALIKFKPLETDSVVFTGLRNELLEMSEPLA* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g3359 472 MobiDBLite consensus disorder prediction 140 166 - -
Aev03g3359 472 SMART ubx_3 359 449 IPR001012 GO:0005515
Aev03g3359 472 SUPERFAMILY PUG domain-like 185 270 IPR036339 -
Aev03g3359 472 CDD PUB 181 270 - -
Aev03g3359 472 SMART c2hc_5 119 143 IPR006642 GO:0003677|GO:0006281
Aev03g3359 472 Gene3D - 357 450 - -
Aev03g3359 472 MobiDBLite consensus disorder prediction 84 98 - -
Aev03g3359 472 Pfam PUB domain 186 261 IPR018997 -
Aev03g3359 472 Gene3D - 181 271 - -
Aev03g3359 472 MobiDBLite consensus disorder prediction 15 83 - -
Aev03g3359 472 ProSiteProfiles UBX domain profile. 363 447 IPR001012 GO:0005515
Aev03g3359 472 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 471 - -
Aev03g3359 472 MobiDBLite consensus disorder prediction 140 165 - -
Aev03g3359 472 Pfam UBX domain 364 443 IPR001012 GO:0005515
Aev03g3359 472 MobiDBLite consensus disorder prediction 1 108 - -
Aev03g3359 472 MobiDBLite consensus disorder prediction 276 297 - -
Aev03g3359 472 CDD UBX_UBXN6 368 448 - -
Aev03g3359 472 Gene3D Classic Zinc Finger 117 146 - -
Aev03g3359 472 SUPERFAMILY Ubiquitin-like 334 447 IPR029071 -
Aev03g3359 472 SMART PGNneu 187 254 - -
Aev03g3359 472 MobiDBLite consensus disorder prediction 276 292 - -
Aev03g3359 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 152 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g3359 Aev-Chr3 31329073 31331922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g3359 1 395 C2H2 Transcription Factor Family AT2G01650 55.122 2.36e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev03g3359 UBX 7.1e-06 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3359 03 31329073 31331922 Aev03g3359 03 31329073 31331922 ECH