Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0543 ATGGCGCCGAGGGACAAGACCAGTGGCGTTAAGGTTAACGGCGGGGTGAAGGAGGTGCATTTTCGTGGAGTGAGGAAGAGACCATGGGGGAGATACGCTGCGGAGATCAGAGATCCCAGCAAGAAGAGCCGCGTTTGGCTCGGAACCTTTGACACGGCGGAGGAGGCGGCGCGTGCATACGATGCCGCCGCACGCGAGTTTCGCGGCCCTAAGGCGAAGACCAATTTCTCCCTCCCTTCGGAAAATGTTAAGAACGCCAGTCCCAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGACGTCGCCGCTGATTCCTCACCTCTGGATCTCAACCTCGCCCCCGCCATCGCCTCCGTTCGATTCCCCTTCCAGCACCAGTTTCCGGTATTTACCGGCGTGGTGCCGGCGGCAGACCAGGTGTTGTACTTCGACGCTGTCCTACGTGCTGGCATGGGCGGTCCACGTGGCTTTGCTTTTGGCTATAATCAACATTCCGTTACGGCAAGTGAGTTCCACGGGACGGCGAGCGACTCAGACTCGTCCTCCGTTATCGATCTGAACCATAATGAAGGTGATGTTAAAGGGAACGCGAACGCGAACGCGAACGGTTCTAGAATCTTCGATCTAGACCTTAACCATCCTCCTCCACAAGAGATTGCTTGA 669 0.58 MAPRDKTSGVKVNGGVKEVHFRGVRKRPWGRYAAEIRDPSKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFSLPSENVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAIASVRFPFQHQFPVFTGVVPAADQVLYFDAVLRAGMGGPRGFAFGYNQHSVTASEFHGTASDSDSSSVIDLNHNEGDVKGNANANANGSRIFDLDLNHPPPQEIA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0543 222 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Aed9g0543 222 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Aed9g0543 222 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Aed9g0543 222 MobiDBLite consensus disorder prediction 71 105 - -
Aed9g0543 222 MobiDBLite consensus disorder prediction 75 98 - -
Aed9g0543 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 195 - -
Aed9g0543 222 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Aed9g0543 222 MobiDBLite consensus disorder prediction 173 200 - -
Aed9g0543 222 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Aed9g0543 222 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Aed9g0543 222 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Aed9g0543 222 CDD AP2 20 76 IPR001471 GO:0003700|GO:0006355
Aed9g0543 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0543 Aed-Chr9 3785601 3786269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0543 17 83 AP2-EREBP Transcription Factor Family AT5G44210 88.060 2.67e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed9g0543 AP2 2.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0543 9 3785601 3786269 Aed9g0543 9 3785601 3786269 ECH
Aed5g1199 5 10642057 10642626 Aed9g0543 9 3785601 3786269 ECH
Aed5g0880 5 6688100 6688711 Aed9g0543 9 3785601 3786269 ECH