Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2224 ATGACAATGGAAGAAGAGTCCTTGGCAGCAGTCCCATTTGACAGAGCTATTGAACAGGTCATGCAATTGTATCTATCAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGAGGAAAGCCGAAGCTCTGATGAGAGAAATTTGATTTGGTACTCAGGACAGCAGGAAAAGCATTTGCGATTGAGTGTAGTTACCAAAATCGTTCAAGGGCAGGAACATATAAAGTCCCAGAGGCAAAATGAATCCGAAAAGGAGTGTCATTCATTTTCACTAATCTATGCTAATGGTGAACGTTCTCTTGATCTGATATGCAAGGACAAAGCACAAGCGGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCTAGGTGTCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGGGTGCAGAGTTGTGCTAGTAGTCCTGCTGGAATCTTAAGAAGAAAGAAAAATCTTGGCCTTCTGGACGATACCTCTCAGTTTACTCAGGTACATAGCGTATGTGCAAGTCCTACTTTGTCACTTTCTGAAAGGTGCTTTTCTGATGGCTTGTCATGTACATCTGATAACTTTTATTCATCGGCATCTTTCCTCTCCAGCACTAATGGGGTAACAGATAATTCAGTGCCAAGTTCTCCATACATTGATCCAGATATTCGTAGCAACATTGAGTCAACCCGCAATGATAAGGAGCACAAGAAGAATTTGTCCTATAGGTATCTGATGCATTCTACCACCCCACATGTAGGAAAAAACAACGTGTTGAAGGATGTAATGATATGGGGTGGAGGGATTGAATGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAACCTGGAATTTATTCTTTAGTGCCAAAGTTACTAGAATCCACTGCAATGTTAGATGTTTATAACATAGCTTTAGGAGGAAAACATGCTGCTTTAGTTACAAAACGAGGGGAAGTGTTTTGCTGGGGCCAAGGGAAGTGGGGGAGACTGGGGCAAAAAATTGATATGGACATTAGTTCCCCCAAAGTAGTTGATTCTCTTAATGGTCTTCATGTAAAAAATGTTGCTTGTGGTGAATATCATACGTGTGCTTTGACAGATTCTGGTGAAGTATATACTTGGGGGAATGATGTTAGCTGTGCAGATTTATTGAATGAAGGGAGAACTAGAAGTCAGTGGATACCACAAAAACTTGGTGGACCCTTAGATGGTATTAGTATCTCAAGTGTTGTTTGTGGGGAATGGCATACTGCAATTGTGTCTAGTTGTGGGAGGTTATTTACTTATGGAGATGGTACATTTGGGGTTCTTGGCCATGGTGATCTTCGGAGTTATTCAAGTCCAAAAGAAGTTGAATCTCTTAGTGGTCTACGGGTGAGGTCTGCTGCTTGTGGATCATGGCATACAGCTGCTATTGTTGAAGGCATGTTTGATCGCTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAAGGGAGGCTCGGTCATGTTGATAATGGAAACAAGCTTGTACCAACATGTGTTACACAGCTTGTTGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTGACTAACATGGGCAAGGTTTTTGCAATGGGAAGTGCCAAATATGGACAACTAGGAAATCCACATGCGAGGGATAAAGCAGTGATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTGATATCAACCGGTTCATATCATGTTGCTGTTTTGACTTCTGCTAGGAGTGTGTATACATGGGGAAGAGGTGAAAGTGGCCAACTGGGGCTAGGTGATACTGAAGACAGACACACACCTTGTTTTGTTGAGGCTCTAAGAGACAGACAGGTAAATACTATTACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAGTCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAACACAACTGTTATAACTGTGGTCTTTTGTTCTGTCGTGCTTGTAGTAATAAAAAGATTACAAATGCACCTCTAGCCCCTAGTAAGACCAAGGCTTTTCGAGTTTGTGATCAGTGTTTTGATAAACGACAAGGGGCTACAAATTCAATAATGGCATCAAAGTCCAGAAATTACAACAGTAATCAGCAATTGTTGAAGCATCATCAACACAAAATTGCTGATATGACTGAAGATAGGGGTGAGACAACTGTGACACAAGGTCCTTTGTTGTCACTTGGTCAATCATGTTACAGGAAAAGCATGCCAAGTGGACGTAAGGATTGGAAAAACCATCAAGAAAGTCAGCAGGATGTAGAAGATAATTCTTCTAAGCTAGGTGGAATGCCACAGTGGGGCCAAGTTCCATGCCCTGCCATATTTCAAATAAATTGTACAGAAAATCCAGTTGTTCATGTTTCTTCATCCAAAAATAAATTAGCCACAGTTTCTCCCCTTAATGTGGAATCTACAACACATAGCTACTCCAATGCAGAGACAGATACAACAAAGTCTGACAAGCTGCTCCTGGAAGAAGTTTATAAGCTGAGAGCCGAGGCTAAGAGGCTTGAAGAGCAGTGCGAGCTCAAAAACCATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTAGCAAGAGAGGAAGCTGCTAAGTACAAGGCAGCAAATGAGGTCATAAAAGCATTAGCACTAAGGCTTCATACAATATCAGGAAAAGATAACGTTGGACAAGAAGGAAAAGTTGGGGCGAATGAATTTGTGCCCAATGTGGCACCAATACATACAGATATGAAGAGTACAAGAGATTGCAATGTGGATAGTCTATCCAATTCCCCTATAGTATTCTCTGACACATTAAAATCCAAATTTGGGAGAAGTATGTTCCCCAAAATTGATAATTCTACTAATACAAATAGAGCAGAATCTCAACAAGACAAGGCTGAATGGGTAGAACAATATGAGCCCGGTGTTTACATCACATTTACAACTTTGCCATGTGGGAAAAAAGGCCTTAAGAGAGTGAGATTTAGTCGAAAGCGATTCTCAGAGAAGGAAGCTGAAAAATGGTGGGAAGAGAATCAAGGGTCGGTGTATCACAAGTATGGGATTGAAGGATATATAAACACTAGCCAAAGTCAGTTGAAAGGCTAA 3192 0.4082 MTMEEESLAAVPFDRAIEQVMQLYLSRKVHIYLSVVVEESRSSDERNLIWYSGQQEKHLRLSVVTKIVQGQEHIKSQRQNESEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCASSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSCTSDNFYSSASFLSSTNGVTDNSVPSSPYIDPDIRSNIESTRNDKEHKKNLSYRYLMHSTTPHVGKNNVLKDVMIWGGGIECLVGIVNERFVQPGIYSLVPKLLESTAMLDVYNIALGGKHAALVTKRGEVFCWGQGKWGRLGQKIDMDISSPKVVDSLNGLHVKNVACGEYHTCALTDSGEVYTWGNDVSCADLLNEGRTRSQWIPQKLGGPLDGISISSVVCGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSAACGSWHTAAIVEGMFDRFRYNSASGKLFTWGDGDEGRLGHVDNGNKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHARDKAVMVEGQLKQEFVKVISTGSYHVAVLTSARSVYTWGRGESGQLGLGDTEDRHTPCFVEALRDRQVNTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSNKKITNAPLAPSKTKAFRVCDQCFDKRQGATNSIMASKSRNYNSNQQLLKHHQHKIADMTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKNHQESQQDVEDNSSKLGGMPQWGQVPCPAIFQINCTENPVVHVSSSKNKLATVSPLNVESTTHSYSNAETDTTKSDKLLLEEVYKLRAEAKRLEEQCELKNHKIQECQQKIEESWFVAREEAAKYKAANEVIKALALRLHTISGKDNVGQEGKVGANEFVPNVAPIHTDMKSTRDCNVDSLSNSPIVFSDTLKSKFGRSMFPKIDNSTNTNRAESQQDKAEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQGSVYHKYGIEGYINTSQSQLKG 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2224 1063 MobiDBLite consensus disorder prediction 209 225 - -
Aed7g2224 1063 SUPERFAMILY PH domain-like 43 121 - -
Aed7g2224 1063 Pfam Pleckstrin homology domain 56 119 IPR001849 -
Aed7g2224 1063 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 463 473 IPR000408 -
Aed7g2224 1063 SUPERFAMILY RCC1/BLIP-II 260 643 IPR009091 -
Aed7g2224 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 424 IPR000408 -
Aed7g2224 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 720 IPR013083 -
Aed7g2224 1063 Pfam FYVE zinc finger 649 707 IPR000306 GO:0046872
Aed7g2224 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 487 536 IPR000408 -
Aed7g2224 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 425 473 IPR000408 -
Aed7g2224 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 593 639 IPR000408 -
Aed7g2224 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 369 420 IPR000408 -
Aed7g2224 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 318 366 IPR000408 -
Aed7g2224 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Aed7g2224 1063 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 42 1051 - -
Aed7g2224 1063 MobiDBLite consensus disorder prediction 765 790 - -
Aed7g2224 1063 CDD FYVE_like_SF 652 705 - -
Aed7g2224 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 539 IPR000408 -
Aed7g2224 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 591 642 IPR000408 -
Aed7g2224 1063 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 647 709 IPR017455 -
Aed7g2224 1063 Pfam Transcription factor regulating root and shoot growth via Pin3 993 1048 IPR013591 -
Aed7g2224 1063 ProSiteProfiles BRX domain profile. 994 1049 IPR013591 -
Aed7g2224 1063 PRINTS Chromosome condensation regulator RCC1 signature 301 314 IPR000408 -
Aed7g2224 1063 PRINTS Chromosome condensation regulator RCC1 signature 320 336 IPR000408 -
Aed7g2224 1063 PRINTS Chromosome condensation regulator RCC1 signature 411 427 IPR000408 -
Aed7g2224 1063 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Aed7g2224 1063 PRINTS Chromosome condensation regulator RCC1 signature 586 607 IPR000408 -
Aed7g2224 1063 PRINTS Chromosome condensation regulator RCC1 signature 427 441 IPR000408 -
Aed7g2224 1063 PRINTS Chromosome condensation regulator RCC1 signature 529 547 IPR000408 -
Aed7g2224 1063 MobiDBLite consensus disorder prediction 767 783 - -
Aed7g2224 1063 SMART fyve_4 641 710 IPR000306 GO:0046872
Aed7g2224 1063 Coils Coil 850 884 - -
Aed7g2224 1063 Gene3D - 238 381 IPR009091 -
Aed7g2224 1063 Gene3D - 382 479 IPR009091 -
Aed7g2224 1063 Gene3D - 480 648 IPR009091 -
Aed7g2224 1063 SUPERFAMILY FYVE/PHD zinc finger 648 719 IPR011011 -
Aed7g2224 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Aed7g2224 1063 PANTHER F12P19.9 PROTEIN 42 1051 - -
Aed7g2224 1063 MobiDBLite consensus disorder prediction 209 233 - -
Aed7g2224 1063 Gene3D - 34 128 IPR011993 -
Aed7g2224 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 540 590 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2224 Aed-Chr7 24736780 24742779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2224 995 1053 Major Intrinsic Protein MIP AT1G31880 45.763 3.00e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2224 7 24736780 24742779 Aed7g2224 7 24736780 24742779 ECH