Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2612 ATGGGTCTTGGTTTGAAGATGAAGAGCCTGAGGCACCACCCAGTGGCCATGAAGTTACATGAGCAAGCGGGGAGCAAAAGAAAGTACACTTTCATTCAGGCACACAGGGCATGGCTTCCCAAGTTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGCTGCTTCATCTTTAGTAAAATGGATGCTGACACTAAAGTCAGAAGGAAAGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTTCATTATTACAGAACCCCTTCTGCCATTGACCAGGAAACCTTTGCAGAGTATACAGCCAGGACAGCATTTGAACGGCCATTACTCAGTGGAGTGGCCTATGCACAAAGAGTAGTTAACTCAGAGAGAGAAACATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACTGGTTAGAGATGAGTATGCACCGGTGATATTTGCGCAAGAAACCCTCTCTTACCTTGAATCTCTTGATATGATGTCGGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGTCCTTTTAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTATAAATCTAAGCTCCCTCTAAAGCCAACAATGGAAGAGCGCATTAAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCTCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATCTTGGTGAACGTGTATGATATCACAAACTCTACTGACCCCTTAATCATGTATGGCAACCAAAATGAAGATGGTGATTTGTTTGTTGTCCATGAAATGGGTTATATTTTATATGGTGCTGGAAATCACATTGTCAAAGTAGAGGATGATTTTCATGAAATGCAGGAATTAAAGGTCCGAGCAGAAGCAGCTGATATTGCTAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGCTCTGCTTCTAAAGACAGAATTGAGTTCAACTCAACGAGATTATGCCCAGACTGCTCAGGCATGTGGGAAAGCTCTGATAGCATTAATAAATGAGGTACTTGACCGGGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCGGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAACCTTGTTGGAAACTCAGTTAAATTCACTGAGCGAGGACATGTATTTGTGAAAGTCCATCAAGCTGAAAATAGAATGAATGGAAAAATTGAGAAATTTCTAAACGGAGGATCAGATGAAGCTGCTGTGCATATGGCTGGTGGTTATAATTTCAAAACTTTAAGTGGATACGAAGCAGCCGATGAGCGGAACAGCTGGGACAATTTTAAGCATCTAATTGCTGATGAAGAATTTTTCTTTGATGGTTCTGTGAAAGAGGCGGCAAGTGAATCTTACGAGGAAGTGACCTTGATGGTGAGTGTGGAGGACACAGGAGTTGGAATTCCTTTGTCAGCCCAAGATAGGATTTTCATGCCATTTGTGCAGGCAGACAGCTCGACCTCTCGACATTATGGTGGTACTGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGTGAGATAAGTTTCATAAGCGAACCGCAGCCGGATATTATTTTTGTGGAGAAAGATTCATGGGTTGGTGAGATCTTGAATGTGTGGAAACAGAATGGACATATGTTAAAGATGCCTCAAATGATTCTTCTAGCGACCAACATGGGTAATGGTGAATTTGATAAAGCTAAAGGCGCAGGTTTCAGCGATACTGTGATAATGAAGCCTCTGAGAGCAAGCATGGTGGCTGCGTGTCTTCAGCAAGTTTTGGGAACAGGGAAGAAGAGGCAACACGGGAAAGACACGAAGCCTAATGGTTCCACTTTTGTACAAAGCCTTCTTTGTGGGAAAAAAATCTTGGTGGTTGATGACAATGTGGTCAACCGGAGGGTAGCTGCAGGTGCGTTAAAAAACTTTGGAGCTGATGTGACGTGTGCGGAAAGTGGAAAAGTTGCTCTTCAAATGCTGCAATTGCCTCACAACTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACTCGGAGAATTCGGATGATGGAAAATGGGTGGAAAAACAACAAGTACCACATACCTATATTGGCGATGACAGCTGATGTAATTCACGCAACATACGATGAGTGCGTGAAATGTGGAATGGATGGATATGTCTCGAAGCCTTTTGAAGAAGAGAATCTGTATCAAGCACATAGTGACACGTGGCCGCACAAGTCCATATCTTGTGTGTGTACATATAAGATAGAAGATGGGATGTTTGAAGAAAAAAGAATGGCACAGTATCAGAACCAGTACGGTGCAGTTCCTGTTAGCAAGGATTCAATTCTTCAGAGGGAAATGGAAACCACTGGCGTTGCCGTTGGTGCTGGTAGCGGTACAGAAGTGATAGCAGACACAAGTGATGAGAATGAGAAGCATCAGAAGAAGAAAGGAATAATAGAGAAAATTAAGGAGAAGCTTCCTGGGGCAACAACAGATCACCACAACAAGTAG 2826 0.431 MGLGLKMKSLRHHPVAMKLHEQAGSKRKYTFIQAHRAWLPKFLMLWILLMALIGCFIFSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERETFEKQHGWVIKTMEREPSLVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPLKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNSTDPLIMYGNQNEDGDLFVVHEMGYILYGAGNHIVKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLKTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHVFVKVHQAENRMNGKIEKFLNGGSDEAAVHMAGGYNFKTLSGYEAADERNSWDNFKHLIADEEFFFDGSVKEAASESYEEVTLMVSVEDTGVGIPLSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISEPQPDIIFVEKDSWVGEILNVWKQNGHMLKMPQMILLATNMGNGEFDKAKGAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGKDTKPNGSTFVQSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKVALQMLQLPHNFDACFMDIQMPEMDGFEATRRIRMMENGWKNNKYHIPILAMTADVIHATYDECVKCGMDGYVSKPFEEENLYQAHSDTWPHKSISCVCTYKIEDGMFEEKRMAQYQNQYGAVPVSKDSILQREMETTGVAVGAGSGTEVIADTSDENEKHQKKKGIIEKIKEKLPGATTDHHNK 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2612 941 SMART HKATPase_4 454 635 IPR003594 -
Aed5g2612 941 CDD HATPase_EvgS-ArcB-TorS-like 459 622 - -
Aed5g2612 941 PANTHER TWO-COMPONENT HISTIDINE KINASE 622 843 - -
Aed5g2612 941 PANTHER TWO-COMPONENT HISTIDINE KINASE 308 623 - -
Aed5g2612 941 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 307 - -
Aed5g2612 941 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 328 408 IPR036097 GO:0000155|GO:0007165
Aed5g2612 941 MobiDBLite consensus disorder prediction 909 941 - -
Aed5g2612 941 ProSitePatterns Dehydrins signature 2. 926 933 IPR030513 -
Aed5g2612 941 Gene3D - 406 629 IPR036890 -
Aed5g2612 941 Gene3D CHASE domain 114 311 IPR042240 -
Aed5g2612 941 PANTHER HISTIDINE KINASE 4 622 843 - -
Aed5g2612 941 ProSiteProfiles Histidine kinase domain profile. 349 622 IPR005467 -
Aed5g2612 941 PANTHER HISTIDINE KINASE 4 308 623 - -
Aed5g2612 941 PANTHER HISTIDINE KINASE 4 24 307 - -
Aed5g2612 941 SMART REC_2 723 842 IPR001789 GO:0000160
Aed5g2612 941 CDD REC_hyHK_CKI1_RcsC-like 725 841 - -
Aed5g2612 941 ProSiteProfiles Response regulatory domain profile. 724 846 IPR001789 GO:0000160
Aed5g2612 941 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 454 622 IPR003594 -
Aed5g2612 941 SMART CHASE_2 110 295 IPR006189 -
Aed5g2612 941 MobiDBLite consensus disorder prediction 902 941 - -
Aed5g2612 941 Gene3D - 316 405 - -
Aed5g2612 941 ProSiteProfiles CHASE domain profile. 110 299 IPR006189 -
Aed5g2612 941 Pfam Response regulator receiver domain 725 841 IPR001789 GO:0000160
Aed5g2612 941 SMART HisKA_10 342 407 IPR003661 GO:0000155|GO:0007165
Aed5g2612 941 Gene3D - 699 846 - -
Aed5g2612 941 Gene3D - 61 113 - -
Aed5g2612 941 SUPERFAMILY CheY-like 722 843 IPR011006 -
Aed5g2612 941 Pfam CHASE domain 113 293 IPR006189 -
Aed5g2612 941 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 396 625 IPR036890 -
Aed5g2612 941 Coils Coil 392 412 - -
Aed5g2612 941 Pfam His Kinase A (phospho-acceptor) domain 342 407 IPR003661 GO:0000155|GO:0007165
Aed5g2612 941 PRINTS Bacterial sensor protein C-terminal signature 561 575 IPR004358 GO:0016310|GO:0016772
Aed5g2612 941 PRINTS Bacterial sensor protein C-terminal signature 579 589 IPR004358 GO:0016310|GO:0016772
Aed5g2612 941 PRINTS Bacterial sensor protein C-terminal signature 596 614 IPR004358 GO:0016310|GO:0016772
Aed5g2612 941 CDD HisKA 342 403 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2612 Aed-Chr5 26822473 26827134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2612 620 852 Histidine Kinase Gene Family AT2G01830 63.158 3.94e-90 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed5g2612 CHASE 3e-37 CL0165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2612 5 26822473 26827134 Aed5g2612 5 26822473 26827134 ECH