Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2602 ATGGTGAAATCGAACGAAAATGGTTCTGGTTCTGGTTCTGTGCCTCCTTTTCTGAAGAAATGTTACGATATGGTGGAAGACCCCAACACCGACTCTATCATCCGTTGGAGCGACGGCGCTGACAGCTTTCTCATCTCCGACACCACTCAATTATCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACTGATTGCTGGGAATTTGCCAATGAAAACTTTGTTAGGGGTCAAAAGCATCTGTTGAAGAATATACATAGAAGGAAACATCCACACACTGCGGATCAGCAAAAAGCATTGCCTCAGAAAGACAATTGTGATGAACCATCGCAAGAATCACTGATTCATGGCCTATGGAAAGAAGTTGAGAATCTAAAATCTGATAAAAATTCGCTCACACAGGAGTTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTCTTGGTCATGGTCGTGCAAAGCCCTGGATTCATGGTTCAGCTGCTTCATCCTAAGGAAAATAATTGGCGTTTGGCTGAATCATGGAATGTATTGGATCAAGATAAACAAGATGATAAACCTGTTGCTTCTGATGGGATGATAGTAAAGTATAAACCACCAGTAGGTGAAAAACTAAAGCCCGTAGTTCCGCTATCTCCTGGTTTCAATAAGCAACCAGAACCTGAGCTTTCTGCAGATGGGCTAAAAGACTTGTGCATCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTGTCTCCATTAGAAAATCATTCTCCATTTCTCCTACCGGATCTACCTGATGACGGTTCATGGGAACAGCTTTTTCTAGGTAGTCCTTTCCTGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACCGATAGTGGAATGGAGATGGAACCCACAGTATCTGAGACTCCAAATGAAAACTCTCGAACTTTTGAATCGATGATTGTAGAAATGGAGAAAGCTTGCGAGTTAAACTTGTATCTGAAAACTAATCCTGATTTTCCTCAGTGA 1134 0.4162 MVKSNENGSGSGSVPPFLKKCYDMVEDPNTDSIIRWSDGADSFLISDTTQLSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLKNIHRRKHPHTADQQKALPQKDNCDEPSQESLIHGLWKEVENLKSDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENNWRLAESWNVLDQDKQDDKPVASDGMIVKYKPPVGEKLKPVVPLSPGFNKQPEPELSADGLKDLCISSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSPFLGNIQDSNKESEGHTDSGMEMEPTVSETPNENSRTFESMIVEMEKACELNLYLKTNPDFPQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2602 377 MobiDBLite consensus disorder prediction 318 348 - -
Aed5g2602 377 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 348 - -
Aed5g2602 377 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Aed5g2602 377 MobiDBLite consensus disorder prediction 106 127 - -
Aed5g2602 377 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aed5g2602 377 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aed5g2602 377 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aed5g2602 377 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aed5g2602 377 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aed5g2602 377 Coils Coil 140 167 - -
Aed5g2602 377 Gene3D - 10 107 IPR036388 -
Aed5g2602 377 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aed5g2602 377 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 348 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2602 Aed-Chr5 26733143 26736734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2602 14 315 HSF AT1G67970 50.164 1.71e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aed5g2602 HSF_DNA-bind 9.2e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2602 5 26733143 26736734 Aed5g2602 5 26733143 26736734 ECH