Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2583 ATGGGCACTTCGAAGACGGTAATGTGTTCGCTGAACCAGTTGCGGCCGCTAACCTGTGGCGCATCGGCATCGGCATCGGCATCGGCATCGGCATCGGCGTCACCGTCACGGTTGGTGCCGCACCCAGCCGACCTGGTGAAGTGGGTAACCAGAGAAGGTGGGTTCGTGCACCGCGCGGTGAAGATAGCACAAGTGGATTCCAATGGAGGACTGGGCCTAGTCGCGAAGGAGGAAATTCCACGTGGCAGTGACCTTATTGTGCTCCCGCATCAGCTTCCCCTGCGCTTTACCTCTCTCGAACAGCAAGACCCTCTCCTCCATCACTTGGTGCGCAGAGTCCCTGAGGAACTATGGGCAATGAAACTTGGTTTGAAGCTTCTGCAAGAGAGGGCAAAACTTGGATCATTCTGGTGGCCATATATTAGCAATCTCCCACAAACATACACTCTGCCTATTTTCTTTCCTGGGGACGATATCAAGAACTTGCATTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCTTGCCTTGGAAAATCTTACGCCAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTTCGGTTATATGGTGAAAAGGATCCCAATGGGACACGCATCGACACACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGACACCAGTAGCATGAAGATGCAAGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTCTGTTACTTTGCTATGGCTGTTTAAACAATGATCTTTTCCTTCTTGATTATGGATTTGTGATGCACTCAAACCCTTATGATTGTATTGAGCTCAAATATGATGGCGCTCTTTTGGATGCTGCAAGCACAGCAGCTGGAGTTTCTTCACCAAACTTCTCAACACCTGCTCCATGGCAGGAACTGATCTTATCTCAGCTGAATCTAGCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTGAAGAAACAGTAGAGGGACGCTTGTTGGCGGCATTGCGAGTACTCTTTTCAAGTAACAGGGAAACTGTGCAGAAGTATGACCTCAGCACACTCCAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACATAACTGTATTTCGCACTCTAATTGCTTTGTGTGTCATTGCACTGGGACATTTTCCCACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGTTTCAGGTTCAACCGAGTTAGCCATTCGGTACAGAATCCAAAAGAAATCTGCGATTATAGACGTCATGAAAAATCTCTCAAGGAGGGTGAAGCTTCTATCATCAAAGGAAACAGCAACCGCCGAAGGCTAA 1446 0.4703 MGTSKTVMCSLNQLRPLTCGASASASASASASASPSRLVPHPADLVKWVTREGGFVHRAVKIAQVDSNGGLGLVAKEEIPRGSDLIVLPHQLPLRFTSLEQQDPLLHHLVRRVPEELWAMKLGLKLLQERAKLGSFWWPYISNLPQTYTLPIFFPGDDIKNLHYAPLLHQVNKRCRFLLDFEQEVKLALENLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDPNGTRIDTPMMLPLIDMCNHSFNPNARIVQEEDTSSMKMQVVAETAIKEDDPLLLCYGCLNNDLFLLDYGFVMHSNPYDCIELKYDGALLDAASTAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGEETVEGRLLAALRVLFSSNRETVQKYDLSTLQSLDAEAPLGVANDITVFRTLIALCVIALGHFPTKIMDDESLLKQGVSGSTELAIRYRIQKKSAIIDVMKNLSRRVKLLSSKETATAEG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2583 481 ProSiteProfiles SET domain profile. 58 286 IPR001214 GO:0005515
Aed5g2583 481 Pfam Rubisco LSMT substrate-binding 336 455 IPR015353 -
Aed5g2583 481 SUPERFAMILY SET domain 40 304 IPR046341 -
Aed5g2583 481 PANTHER F21J9.27 6 478 - -
Aed5g2583 481 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 478 - -
Aed5g2583 481 Gene3D set domain protein methyltransferase, domain 1 10 299 - -
Aed5g2583 481 Pfam SET domain 70 286 IPR001214 GO:0005515
Aed5g2583 481 Gene3D - 337 478 IPR036464 -
Aed5g2583 481 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 296 475 IPR036464 -
Aed5g2583 481 CDD SET_LSMT 59 300 - -
Aed5g2583 481 SMART set_7 58 292 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed5g2583 SET 1.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2583 5 26614399 26617508 Aed5g2583 5 26614399 26617508 ECH