Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2571 ATGGAGAGAGATTTCATGGGTCTCAACTCCAAAGAGCCACTAGCTGTGGTGAAGGAGGAGATGAACGATGATGCCTGCAAAGACTCTGGCTTCACAAAGGGTTCGATTGCACAGTGGCCCTTCTCGAACAAAGTATCTGCCCTTCCACATTTAATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATAGTGTCTGATCCCTTAACATCTGCAGCCTTTATGTCTGTCTTAAGTCAAGATGCATATGACTCTAGTCACAAACGCTCTGCTGGTGAACCCCAGAAATCTTTCAATCACGATGGGCAAGGTGGCCTTCATTTTTCGCTGACTCCATATCCTGTACAACATGATGTGAATTCTGTGAATCGTCCTCATGATGTGAAGATGTTTTCAGTTCCCAATCAAGCAATTTCAGTTTCCTTGGGGAATCCATTCCTGAAGAATCATTTTCCAACTGCTGCTCAGAATATGAATGGCACTCATGTGAAGCATCCGTTCCTTGGGGGAATACCTGTTACAGCGCCTCATTCAGTTCTTCCCTCTGTTGTTGGAATGACTGAATCATGTAACAGTGTGAAACCATCTGCACTTTCTGCCCAACTTACCATCTTCTATGCGGGTACTGTCAATGTATTTGATGATATCTCCCCCGAGAAGGCACAAGCTATCATGTTGTTGGCTGGCAATAGCTTATCTGTAGCTTCTAACATGGCGCAGCCAAAAGTTCAGGTGCCTGTGAGTGTCTCCAAGTTGGCTGCTGGTGATGGTGTGCCTGTGAGTCAACCTGCAAATACATCACCCGGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCAGGGAGTGGCTCAACTAGCACCGATGAATTTCTGGCTGCTAAAACAACTAGAGTTCCCACCACTCCTGTTTGCAATGTGGAGCCTCCAAAGGTAGTCAGTGCCACCGCTATGTTGACATCAGCTGTACCTCAGGCTCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAACGCAAAGAAAGGGTGATGAGTGCAGCACCATATAACCTGAACAAGAAGTCTGAAGAGTGTGGCATTGCAAAATACGCTGGTGCTAATTAA 1101 0.455 MERDFMGLNSKEPLAVVKEEMNDDACKDSGFTKGSIAQWPFSNKVSALPHLMSFKASQDDKTKKIVSDPLTSAAFMSVLSQDAYDSSHKRSAGEPQKSFNHDGQGGLHFSLTPYPVQHDVNSVNRPHDVKMFSVPNQAISVSLGNPFLKNHFPTAAQNMNGTHVKHPFLGGIPVTAPHSVLPSVVGMTESCNSVKPSALSAQLTIFYAGTVNVFDDISPEKAQAIMLLAGNSLSVASNMAQPKVQVPVSVSKLAAGDGVPVSQPANTSPGSGLSSPLSVSSGSGSTSTDEFLAAKTTRVPTTPVCNVEPPKVVSATAMLTSAVPQARKASLARFLEKRKERVMSAAPYNLNKKSEECGIAKYAGAN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2571 366 Pfam Jas motif 324 348 IPR018467 -
Aed5g2571 366 MobiDBLite consensus disorder prediction 259 290 - -
Aed5g2571 366 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 359 IPR040390 -
Aed5g2571 366 ProSiteProfiles Tify domain profile. 196 231 IPR010399 -
Aed5g2571 366 MobiDBLite consensus disorder prediction 261 290 - -
Aed5g2571 366 PANTHER PROTEIN TIFY 7 13 359 - -
Aed5g2571 366 Pfam tify domain 200 230 IPR010399 -
Aed5g2571 366 SMART tify_2 196 231 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2571 Aed-Chr5 26562241 26565611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2571 39 354 Tify Gene Family AT3G17860 37.870 9.14e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Aed5g2571 tify 6.5e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2571 5 26562241 26565611 Aed5g2571 5 26562241 26565611 ECH