Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1535 ATGCTAAATTTGCGTCAAAGTGAAGTCCTTGTGCTTCAAGAATCAAGATTCTTCTCCATGTTCCAGTGGACTCTTCAAGGTTTTAAAGGGCATAAGCGTCGTCCATGGACAAGAGAGGATGCTGAGATGAAATGGGATTTCCTTAGCCTGAGTGAGCCAAGAGAGGATTCTTCAAAGAGATCCCTCGAGGAAGTTGTTGAGAGGGAGAGTAATAGGGAGAAGAAGCCAAAACTCGAGACTCTTAACCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACTGCTTCAAACGCCTTGCAAAATGGTGATCAACAACAACAACAACCAGTTAGGACTAAACCTTGCAGGCCATCCACCACTACTCACACTTCATATTCCAATGACTACACTGCTGCTTCTTTGTCTTACTCTTATTCCCACCCTTTCTCTCACAACCCAAGCTGTTCTCTCACCCGCAATTCAACCGACAATTTTGATTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGGACAAATGGGTCTGTGCATAGTAGGTTCAAGCCAATTGGAGATGGCTTGGTTGCTTTATCAAACCATGGTGCTGCTGGTGGTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAACAAAACTACTAGTTCAGATAATCATTCTTTTTTTCCTTCAGAGTTGCCTGCAAGGCCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGGGGGAGGAATAATTCTGAGAATCTGAGAATCTTGGAGGGATTGGATGATGGGAAGGTAAGGAAGCATTCCAGACCGGAGAGAATTGTTAGGGAGATTGTTTCAGAGTCTATACCTGTCATGGCACTGATAATTCAGGAGCTTACTGATGATGTCATAGCATCCATTAAGGAATACTTGAAGAATCTCATTGAGAAGAAAGAGGAACTGGTAAGCCTACAAAACCGGCTTGAGAGAAGATCTGATCTTACCAAGGAGAGTCTTTCAAAGTGCCATAAAGTGCAATTAGAGGTTTTAGTGGCTGTCAAGATGGGGCTTGCTAGCTTCCTATCTGGCAAAGTTCAGTTATCTGAGATGGTAGAGATTTTCTTGTATAAGAGGTGTAGAAATGTAACCTGCAACCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAACAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCCCATTGGTGCCATGCTACCTGTGGCATTCAAAGGAATCTTATCAAGCCCGGGCCTAGCTTGAAGGGACCCTCGGGAACCTCGGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCGGAAATGTTTGGTTTCGTTAAAGACGTGTTTGTGTGTTGTGCAAAGGATTGGGGTCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAAGATCTTCAGGGGAAGTGAAGATCGCAAAGGGAGGGAATTGCATGTTAAAACTGATGACATGCTATTAAAGCTTCAAACTAAAATGGTATCTCCTTTGGATGCCTGCAATTACATCATGCAATTTTTCAGCTATGCGGACAGCATGTCAGACTTTCCTGCTTCTAGTATTTCTTCAAAGGATTTGTCAGCCTCTCAATCTAACCTTACAAAGGATACACCATCTCTTTCAAAACCTAATCCTCTATTACCAAAATATGGTTATGACATGGGCTATTCTAGGTCACATCCTGATGCCATATCAAGTGATCATCTACTTCAGAAAGACCTCAAAGCTTCCATCTTAAGTGAACTGAAAAATGAGGCTGATTTCCATTTGGGGGCCTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAAAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACGAAGACTGCACAGATGGAAGAAGAATACGCCGACAAGCTTTCCAAACTCTGCTTGCACGAGACCGAGGAAACGCAGAGAACAAAATTGGATGAACTGAAAGTCTTGGAAAATTCCTATTTTGATTACTATAAAATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTGA 2205 0.429 MLNLRQSEVLVLQESRFFSMFQWTLQGFKGHKRRPWTREDAEMKWDFLSLSEPREDSSKRSLEEVVERESNREKKPKLETLNLSLALPDVSLSLTASNALQNGDQQQQQPVRTKPCRPSTTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGLVALSNHGAAGGGISSFMQGNSQYNKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNNSENLRILEGLDDGKVRKHSRPERIVREIVSESIPVMALIIQELTDDVIASIKEYLKNLIEKKEELVSLQNRLERRSDLTKESLSKCHKVQLEVLVAVKMGLASFLSGKVQLSEMVEIFLYKRCRNVTCNHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFVCCAKDWGLETLMKELDCVRKIFRGSEDRKGRELHVKTDDMLLKLQTKMVSPLDACNYIMQFFSYADSMSDFPASSISSKDLSASQSNLTKDTPSLSKPNPLLPKYGYDMGYSRSHPDAISSDHLLQKDLKASILSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEAKREAEGFQRMIRTKTAQMEEEYADKLSKLCLHETEETQRTKLDELKVLENSYFDYYKMKKRMQDEIDGLLRRMEATKQQWV 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1535 734 MobiDBLite consensus disorder prediction 100 127 - -
Aed5g1535 734 Coils Coil 299 323 - -
Aed5g1535 734 PIRSF UCP025218 102 734 IPR004082 -
Aed5g1535 734 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 630 650 IPR004082 -
Aed5g1535 734 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 287 309 IPR004082 -
Aed5g1535 734 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 481 500 IPR004082 -
Aed5g1535 734 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 362 383 IPR004082 -
Aed5g1535 734 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 669 691 IPR004082 -
Aed5g1535 734 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 408 428 IPR004082 -
Aed5g1535 734 CDD PHD_OBE1_like 401 460 - -
Aed5g1535 734 Coils Coil 636 670 - -
Aed5g1535 734 Pfam Coiled-coil region of Oberon 600 723 IPR032535 -
Aed5g1535 734 Pfam PHD - plant homeodomain finger protein 371 495 IPR032881 -
Aed5g1535 734 Coils Coil 712 732 - -
Aed5g1535 734 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 40 734 IPR004082 -
Aed5g1535 734 PANTHER PROTEIN OBERON 3 40 734 - -
Aed5g1535 734 MobiDBLite consensus disorder prediction 233 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1535 Aed-Chr5 19695129 19701690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1535 371 527 PHD Gene Family AT5G57380 26.752 1.09e-08 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1535 5 19695129 19701690 Aed5g1535 5 19695129 19701690 ECH