Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1533 ATGGAGGGGTCTCACTCTCACATGGGGTTGTTGTTCTTCTTTTGTTCCATGCTTTTTGCCTTCGCTTCTGCTGCCTCCTCCAGAAACTTGCCTATCATACCCTTTGATGAAGGGTACGCACCCTTGTTTGGGGACAGTAACTTGGTCATCCATAGGGATGGAAAATCGGTCCATCTTTCACTCGATGAGAGAACAGGTTCAGGATTTGTGTCGCATGATCTTTACCTTCACGGGTATTTCAGCGCTTCTATTAAGTTGCCTTCTGATTACACTGCAGGAGTTGTGGTTGCCTTTTATATGTCAAATGGTGACATGTTCCCGAATAACCATGATGAAATCGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGTAATGGTAGCACCAACATTGGCAGGGAGGAAAGATATGGTCTCTGGTTTGACCCTGCAGATGATTTCCATCAGTACAGTATTGTCTGGACAGATTCTCAGATCATATTTTATGTGGACAATGTTCCTATTAGAGAAGTGACGCGAACAGAATCTATGGGAGGAGATTTCCCCTCTAAGCCAATGACTTTGTATGCAACAATATGGGATGCATCTGATTGGGCCACCAATGGAGGCAAATACAGAGTTAACTACAAGTATGCACCCTATGTTGCTGAATTCTCCGACCTTGTCCTGCACGGTTGTGCAGTGGATCCAATTGAGCAGCACGTGGCCAAGTGTGACAATGCTCAAAGTTCTGAGGAGGCAGCAGCAATTCCTTCAGGTGTTACACCGCCACAAAGAATCAAAATGGAGAATTTCAGGAAGAAACACATGACATACTCCTATTGCTATGACAAACTCAGATACAAAGTCCCTCCTTCAGAGTGTGTCATCAGTTCCCAAGAAGCTGAGAGGCTGAGAAAGTTTGATCCTGTTACCTTCGGTAGTGGCCGCCGTCACCATGGAAAACGACACCGTCGCAGCCAGATACAAGCTGCTTCTGCTTCATCATTTTAA 1020 0.451 MEGSHSHMGLLFFFCSMLFAFASAASSRNLPIIPFDEGYAPLFGDSNLVIHRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPSDYTAGVVVAFYMSNGDMFPNNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTNIGREERYGLWFDPADDFHQYSIVWTDSQIIFYVDNVPIREVTRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEQHVAKCDNAQSSEEAAAIPSGVTPPQRIKMENFRKKHMTYSYCYDKLRYKVPPSECVISSQEAERLRKFDPVTFGSGRRHHGKRHRRSQIQAASASSF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1533 339 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 11 318 IPR044791 GO:0004553
Aed5g1533 339 Pfam Glycosyl hydrolases family 16 39 219 IPR000757 GO:0004553|GO:0005975
Aed5g1533 339 MobiDBLite consensus disorder prediction 312 339 - -
Aed5g1533 339 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 11 318 - -
Aed5g1533 339 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 300 IPR013320 -
Aed5g1533 339 PIRSF EndGlu_transf 3 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed5g1533 339 Gene3D - 20 297 - -
Aed5g1533 339 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 261 297 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aed5g1533 339 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 25 227 IPR000757 GO:0004553|GO:0005975
Aed5g1533 339 CDD GH16_XET 33 297 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1533 Aed-Chr5 19674939 19678491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1533 11 338 Glycoside Hydrolase AT1G14720 65.244 9.43e-165 461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1533 5 19674939 19678491 Aed5g1533 5 19674939 19678491 ECH